Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10650 154 / 9e-41 RING/U-box superfamily protein (.1.2) AT5G24870 151 / 6e-40 RING/U-box superfamily protein (.1.2) AT4G31450 138 / 2e-35 RING/U-box superfamily protein (.1) AT1G17970 97 / 1e-21 RING/U-box superfamily protein (.1) AT1G53190 93 / 4e-20 RING/U-box superfamily protein (.1.2) AT2G15530 93 / 9e-20 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 92 / 1e-19 RING/U-box superfamily protein (.1) AT3G15070 90 / 5e-19 RING/U-box superfamily protein (.1.2) AT4G34040 90 / 6e-19 RING/U-box superfamily protein (.1) AT1G73760 87 / 2e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026941 [exp] 672 / 0 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10042443 [exp] 426 / 5e-145 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10026226 [exp] 370 / 1e-123 AT5G10650 200 / 6e-58 RING/U-box superfamily protein (.1.2) Lus10013497 [exp] 99 / 2e-23 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10007967 [exp] 99 / 5e-23 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10021722 [exp] 95 / 3e-21 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10024810 [exp] 96 / 1e-20 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10034644 [exp] 90 / 4e-20 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10010372 [exp] 93 / 1e-19 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274700 [exp] 320 / 4e-103 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 288 / 9e-91 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.005G139900 [exp] 107 / 1e-24 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 104 / 1e-23 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.015G043900 [exp] 98 / 4e-22 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 98 / 3e-21 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.012G053800 [exp] 96 / 4e-21 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 96 / 1e-20 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 91 / 3e-19 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 87 / 8e-18 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10020145 pacid=23141967 polypeptide=Lus10020145 locus=Lus10020145.g ID=Lus10020145.BGIv1.0 annot-version=v1.0 ATGGATGACTACTCCAGTAAGAGAGGGCCTGACGGCCTTTTGGTCTCTAGGAAAGGTTCTTCAGCTGTTCTACGAGACACTGTAAATAACAAAGATCGCA ATGGTCAGTTTTGCACTCGAATTGGCTGCAGTGGAAGAATGAACTCTGCAAAAGGTACACAACTCAACAACTCTGGCAAAGCCCAATCCCCAAGGACATC TGTTCGGTCTTCCTCTAGTGGGAAGGAAATCATTGGAAGTTCCTCCAGGACTTATTCAGCAGTTAACAGTGCTAGGAAATCCTTCCCCGAATCATCCCGG AAGAAATCATCTTCCCAGGTAGAACCGGATTCTTCTGAGAGTGCTAACACTCAGGATGAGCCTGATGTTCCGGAACTTGAATGTACCTCCAGGAAGCTAC ATAAAGGAAACCATTCTGCTTCTATTGGCACACACAAACTTGAGGTAGCCTCTACGCAAATGGGAAGCTCAAGACTAGCATCAAGTACAGGGTCCCGTGG AGATTTTAATCAGAAGTCAATATCAGGCAATCCACATACTATAGCTAGCTCTTCTACTTCTCTGTCATCAAAGAGCACAGTCCAAGGAAGACGGTCAAAT ATGAGCAAGAATGGTCTAAGGACTTTTAGGTGCAATTCAGTGTCTGATGTTGTGTCTTCAAGTTCACCATCACCAGACTTGAACCTTAACAAAAAGGATG CAGTAAAGAAAAGAACCTCGATTGGAGAGAGTAGTACTGCTGGCAAGGGGAAAAGGATAACTGGCTCAGCTCCACTAGGGCAGAGTTCTACTCTAAATTC TGGGGTCTCCATTTCGGATTCACGGGCCAGAAGTGGACCTCCTATCAGGGATAATCCTGTGCCGTCTGTTAGGACTAGAAGATCTGTAAATAGTTACAAT TACAACAGAGCTCAAGGGACTAGAAACAATACATCTGTAAGCGAGACCCTTGCTGTGGTTTCAGAAGTTCCGCAACATGACCAGAGCATTGATCTGAGTA GCCTTACTTCATCCCAGCAGTTTTTTGTGGAACCCTCCCTAGGGCACCCTTCTTATAGTCGGCCTGGAAGTAGCAGTGGAAGCGCTCGAGGTATCCGTCC ATCTAGTCCTGCAGGAATAAGCAATATGAGGTCCTTATTGAACAGGGAGAATTTCAGACGCTACAACATGGATGGGATAGCTGAGGAACTACTGGCTTTA GAGGACAGAATGGGTACTGTGAGTACAGCAGTGAAGGAGGACGAGTTGTCAGAATGTGTCAAGACTGGAATCTATCAGTCAGTATCCACAGAGGACTCAT CTAGGAACATGAGTTCAGATATGGAGGATATGAAATGCAGTATTTGCCAAGAGGAGTATGCGGATGAAGAAGAGTTGGGGCGGTTACGATGCGAGCATAA GTATCACTTGAACTGCATACAGCAATGGTTAAGGGTGAAGAACTGGTGCCCAGTTTGTAAGACGTCAGCAGTGTCCGAGCTTTCATCATCACACTCTTGA
AA sequence Show only first row Show all	>Lus10020145 pacid=23141967 polypeptide=Lus10020145 locus=Lus10020145.g ID=Lus10020145.BGIv1.0 annot-version=v1.0 MDDYSSKRGPDGLLVSRKGSSAVLRDTVNNKDRNGQFCTRIGCSGRMNSAKGTQLNNSGKAQSPRTSVRSSSSGKEIIGSSSRTYSAVNSARKSFPESSR KKSSSQVEPDSSESANTQDEPDVPELECTSRKLHKGNHSASIGTHKLEVASTQMGSSRLASSTGSRGDFNQKSISGNPHTIASSSTSLSSKSTVQGRRSN MSKNGLRTFRCNSVSDVVSSSSPSPDLNLNKKDAVKKRTSIGESSTAGKGKRITGSAPLGQSSTLNSGVSISDSRARSGPPIRDNPVPSVRTRRSVNSYN YNRAQGTRNNTSVSETLAVVSEVPQHDQSIDLSSLTSSQQFFVEPSLGHPSYSRPGSSSGSARGIRPSSPAGISNMRSLLNRENFRRYNMDGIAEELLAL EDRMGTVSTAVKEDELSECVKTGIYQSVSTEDSSRNMSSDMEDMKCSICQEEYADEEELGRLRCEHKYHLNCIQQWLRVKNWCPVCKTSAVSELSSSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	0	1
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	1.7	0.9542
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	2.6	0.9442
AT5G41350			RING/U-box superfamily protein...		Lus10032270 [exp]	3.5	0.9470
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	3.7	0.9528
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	3.9	0.9465
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	5.7	0.9509
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	6.0	0.9415
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	6.6	0.9172
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	6.6	0.9324
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	6.9	0.9450

Compare expression of checked genes

Lus10020145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.