Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 340 / 2e-114 unknown protein AT4G31440 296 / 9e-98 unknown protein AT2G14850 167 / 9e-49 unknown protein AT4G33890 159 / 3e-45 unknown protein AT5G67410 112 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026942 [exp] 768 / 0 AT2G24530 351 / 7e-119 unknown protein Lus10042444 [exp] 528 / 0 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 476 / 1e-168 AT2G24530 347 / 1e-117 unknown protein Lus10011423 [exp] 188 / 3e-56 AT4G33890 294 / 3e-98 unknown protein Lus10002119 [exp] 184 / 1e-54 AT4G33890 297 / 2e-99 unknown protein Lus10011422 [exp] 154 / 1e-42 AT2G14850 278 / 5e-92 unknown protein Lus10002120 [exp] 71 / 6e-15 AT2G14850 112 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005700 [exp] 472 / 3e-166 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 461 / 5e-162 AT2G24530 415 / 1e-143 unknown protein Potri.009G090500 [exp] 226 / 1e-70 AT4G33890 305 / 4e-102 unknown protein Potri.001G037500 [exp] 223 / 2e-69 AT2G24530 236 / 2e-74 unknown protein Potri.001G296300 [exp] 221 / 1e-68 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 211 / 8e-65 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 186 / 1e-55 AT4G33890 295 / 3e-98 unknown protein Potri.003G187400 [exp] 139 / 1e-37 AT2G24530 229 / 7e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020146 pacid=23142027 polypeptide=Lus10020146 locus=Lus10020146.g ID=Lus10020146.BGIv1.0 annot-version=v1.0 ATGTATCCTCAGCACAGCTCCAGAATTGATTTGGCTGAGCTGAAAACTCAGATAGTGAAGAAGATTGGGGCTGATAGGTCAAAGAAGTATTTCTACAACT TAAATGGGTTTCTGAGCCAGAGGCAAACTAAGAGTGATTTCGACAAGTCTTGCTTTCGCTTACTTGGTAGGGAGAATCTGCCCCTACACAATCAGCTTAT TCGGGCAATACTCAAGAATTCATGCCTTGCTAAGACACCTCCACCAACTCATGACGCTGTGGGTCCCACTAAATCTCAGATTCCGACACTCAAAACTTCT CCGGGCACGGAAGATATCGATGAACACAGTGGGGTACTTCTTTCAAATCAGAATCACACTGCATCCACCATTTGGTCCAATGGGGTTTTGCCTGTATCCC CTCGGAAAATTAGGTCAGGCATGCGTGAAAGGAAGCTTAGAGATCGGCCTAGCCCACTTGGACCAAATGGGAAAGTTGAGAATGGCGGAGCTAAGATTAT CGCGGACAATGGGGATTTCAGTCCTTGCGATTATCAGAGACCGATGCAGCAGCTTCAACCAGTTGCCTCACAACCTCAGAATGAAGGGGAAGCCTTGGTT CAGCGATCCACGTTGATTGAAGACGACAAAGAGGTTGACAACATGGCCTTCTCTAGAAGTCATGTGCTCGCCCCGCTTGGAATTCCATCTTCCTTGCCTA GCTTTTCTGGGGGCCGCAAAGCTACATGTTCTGATGAATTCGATATATGCTACAACAGTGGTGTCTTGTCAGATACAGAGGCGTTGAAAAAACGCATGGA GCAGATTGCTATTTCACAAGGTCTGGGAGGAGTTTCGATGGAATGTGCGAATACGTTAAATAACATGTTGGACGTGTACTTGAAGAGGTTGGTGAAATCT TGTGTTGACCTGGTTGGAGCAAGAGCTCATGATAGTAAGAGGAAGCAGCCTGGCATCAAACAGCAGGTTCCTGGGAAAGTTACCAATGGATTATGGCCTA GTAATCACATGCACATGCATAATAGCAGTGGATCCGTCGAAATCTCGCAAGAACAAAGGCCACCACGGTGTTCAATATCTCTACTTGATTTCAAAGTCGC CATGGAGTTAAATCCACAGCAGCTGGGTGAAGATTGGCCATTGCTGATGGAGAGAATATGTATGCATTCGTTTGAGGATTAA
AA sequence Show only first row Show all	>Lus10020146 pacid=23142027 polypeptide=Lus10020146 locus=Lus10020146.g ID=Lus10020146.BGIv1.0 annot-version=v1.0 MYPQHSSRIDLAELKTQIVKKIGADRSKKYFYNLNGFLSQRQTKSDFDKSCFRLLGRENLPLHNQLIRAILKNSCLAKTPPPTHDAVGPTKSQIPTLKTS PGTEDIDEHSGVLLSNQNHTASTIWSNGVLPVSPRKIRSGMRERKLRDRPSPLGPNGKVENGGAKIIADNGDFSPCDYQRPMQQLQPVASQPQNEGEALV QRSTLIEDDKEVDNMAFSRSHVLAPLGIPSSLPSFSGGRKATCSDEFDICYNSGVLSDTEALKKRMEQIAISQGLGGVSMECANTLNNMLDVYLKRLVKS CVDLVGARAHDSKRKQPGIKQQVPGKVTNGLWPSNHMHMHNSSGSVEISQEQRPPRCSISLLDFKVAMELNPQQLGEDWPLLMERICMHSFED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24530			unknown protein		Lus10020146 [exp]	0	1
AT2G24530			unknown protein		Lus10026942 [exp]	5.3	0.8697
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	6.7	0.8667
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	7.3	0.8760
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Lus10018345 [exp]	9.9	0.8202
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	15.4	0.8747
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	20.8	0.8547
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	22.6	0.8394
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	24.5	0.8205
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	24.5	0.8570
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	27.5	0.8705

Compare expression of checked genes

Lus10020146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.