Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24520 289 / 9e-93 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT2G18960 262 / 2e-82 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 261 / 5e-82 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G42640 253 / 4e-79 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT3G47950 253 / 6e-79 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT4G30190 253 / 6e-79 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G62670 252 / 7e-79 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT2G07560 251 / 3e-78 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G17260 250 / 6e-78 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT1G80660 248 / 5e-77 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026944 [exp] 320 / 5e-107 AT2G24520 1128 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026946 [exp] 320 / 3e-104 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 273 / 2e-86 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 253 / 4e-79 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10028201 [exp] 251 / 7e-79 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10003259 [exp] 252 / 1e-78 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 252 / 1e-78 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10028203 [exp] 247 / 5e-77 AT5G62670 1226 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10040018 [exp] 245 / 7e-77 AT3G42640 1333 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006000 [exp] 296 / 3e-95 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G275000 [exp] 294 / 2e-94 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 283 / 4e-90 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 282 / 5e-90 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.003G179800 [exp] 262 / 6e-83 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.001G048300 [exp] 256 / 3e-81 AT2G07560 1193 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Potri.006G188600 [exp] 257 / 1e-80 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.001G161400 [exp] 257 / 2e-80 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.012G071600 [exp] 251 / 2e-78 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G080500 [exp] 251 / 3e-78 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020148 pacid=23142041 polypeptide=Lus10020148 locus=Lus10020148.g ID=Lus10020148.BGIv1.0 annot-version=v1.0 ATGGCCGGTATGGACGTCCTTTGCAGTGACAAGACCAGGATTCTCACTTTGAACAAGCTCAGTGTTGATAGGAGCTTGGTTGAAGTGTTTGTTAAGGGTA TGGACAAAGAACATGTTATTCTTCTAGCTGCCAGAGCTTCGAGGACCAAAAATCAGGATGCTCTTGATGCTACTATAGTTGGGATGCTTGCAGACCCTAG GGAGGCACGAGCAGACGTTAGGGAGATCCATTTTCTTCCATTCAATCCTGTGGAAAAGAGGACTGCTTTGACCTACATTGATTCAGACGGAAACTGGCAT CGGGGAAGTAAAGGTGCTCCTGAACAGATATTGAACTTGTGTAACTGTAAGGAGGATGTTAGAAGGAAGGTTCATTCGGTTATTGATAAGTTTGCGGAAC GTGGACTTCGTTCTTTAGGAGTTGCACGACAGGAAGTGCCAGAAAAGAACAAAGACAGTCCTGGTGGTCCTTGGCAGCTTGTTGTCTGTTACCTCTTTTT GATCCTCCCAGACATGACAGTGCTGAAACCATTAGAAGAGCTCTGCACCTTGGAGTTAATGTGA
AA sequence Show only first row Show all	>Lus10020148 pacid=23142041 polypeptide=Lus10020148 locus=Lus10020148.g ID=Lus10020148.BGIv1.0 annot-version=v1.0 MAGMDVLCSDKTRILTLNKLSVDRSLVEVFVKGMDKEHVILLAARASRTKNQDALDATIVGMLADPREARADVREIHFLPFNPVEKRTALTYIDSDGNWH RGSKGAPEQILNLCNCKEDVRRKVHSVIDKFAERGLRSLGVARQEVPEKNKDSPGGPWQLVVCYLFLILPDMTVLKPLEELCTLELM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020147 [exp]	1.0	0.9069
AT4G18260			Cytochrome b561/ferric reducta...		Lus10042834 [exp]	3.7	0.7241
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	3.9	0.7897
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	5.3	0.7921
					Lus10013650 [exp]	5.3	0.8294
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	5.5	0.8102
AT2G23140			RING/U-box superfamily protein...		Lus10019306 [exp]	6.9	0.7122
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	8.4	0.7517
					Lus10002071 [exp]	12.1	0.6916
					Lus10013649 [exp]	13.9	0.7432

Compare expression of checked genes

Lus10020148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.