Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71230 432 / 6e-149 CSN5B, AJH2 COP9-signalosome 5B (.1) AT1G22920 431 / 2e-148 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT2G07560 426 / 9e-139 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT4G30190 423 / 7e-138 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G57350 419 / 2e-136 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT3G42640 419 / 3e-136 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G18960 417 / 2e-135 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT1G80660 414 / 3e-134 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G47950 408 / 7e-132 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G62670 404 / 1e-130 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026947 [exp] 481 / 4e-168 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10026946 [exp] 464 / 1e-153 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10002325 [exp] 427 / 3e-147 AT2G07560 564 / 0.0 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10024105 [exp] 434 / 7e-142 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026093 [exp] 424 / 2e-139 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10013483 [exp] 421 / 1e-137 AT4G30190 897 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001631 [exp] 419 / 2e-136 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001437 [exp] 416 / 1e-135 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10019593 [exp] 406 / 8e-132 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006100 [exp] 467 / 2e-162 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.006G275100 [exp] 464 / 2e-161 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.006G275000 [exp] 437 / 3e-143 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 429 / 4e-140 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 427 / 4e-139 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.018G112400 [exp] 419 / 2e-136 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G006000 [exp] 417 / 3e-135 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G005900 [exp] 414 / 2e-134 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 410 / 1e-132 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G188600 [exp] 409 / 3e-132 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease CL0366 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus
Representative CDS sequence Show only first row Show all	>Lus10020149 pacid=23141977 polypeptide=Lus10020149 locus=Lus10020149.g ID=Lus10020149.BGIv1.0 annot-version=v1.0 ATGCAAGGCAAGACCGACGGCGACGCTATTATCGTCATGGACGCCTTCGCTTTGCCTGTTGAAGGCACTGAGACTAGGGTTAATGCCCAAGCGGATGCCT ACGAGTATATGGTCGATTATTCACAGACTAACAAGCAGGCTGGGAGACTAGAGAATGTGGTCGGGTGGTATCATTCACATCCCGGTTATGGGTGCTGGCT ATCTGGTATTGATGTGTCAACACAGATGCTAAATCAGCAGTTTCAGGAGCCTTTTCTAGCAGTTGTTATTGACCCAACAAGGACAGTCTCGGCAGGGAAA GTTGAGATTGGAGCCTTCCGAACATATCCTGAGGGATATAAGCCTCCGGATGATCCAGTCTCTGAATACCAGACCATTCCTCTGAACAAGATTGAGGACT TTGGTGTGCATTGTAAGCAGTATTATTCTCTGGATATAACTTACTTCAAGTCATCTCTTGATTCCCACCTCTTGGATCTTTTGTGGAACAAATACTGGGT GAATACACTTTCTTCATCGCCACTCTTGGGCAATGGGGACTATGTTGCTGGACAAATTTCAGATCTAGCTGAAAAGCTGGAGCAAGCAGAGAATCAATTG AGCCACTCACGATTCGGACCCTTGATAGCACCTCCACAAAGGAAGAAAGAGGAAGAATCACAACTTGCTAAAATTACCAGGGACAGTGCTAAGATTACTG TGGAGCAGGTTCATGGTCTTATGTCACAGGAAAGGATTCCAATTGAGGAAGTGTTTGATCAGTTAAATTGTTCACGGGAAGGTCTCACTTCCGACGAAGG GGCCAACCGCCTTCAGGTTTTCGGACCCAACAAATTGGAAGAGAAAAAGGAGAGCAAATTACTCAAATTCTTAGGTTTTATGTGGAATCCTTTGTCTTGG GTCATGGAAGCTGCTGCAATCATGGCCTTAGCCCTAGCCAATGGCGGAGGAACGCCTCCTGATTGGCAGGACTTCATCGGTATTGTTACTCAATTGTTCA TCAACTCTACCATCAGTTTCATCGAGGAAAACAATGCCGGAAATGCTGCTGCTGCACTCATGGCTGGCCTTGCTCCCAACACTAAGTCACTGTTGTTGCT ATCCATTGCATCTATCTCGTCTCTGTTTCAAATCCTTCTACAAGATGGGCGCTGGACTGAGCAAGAAGCTGCCGTGTTGGTTCCGGGAGACATTATCAGC ATTAAGTTGGGAGATATTGTCCCAGCGGATGCACGTCTTCTAGAGGGAGATCCTCTGAAGATTGATCAATCTGATCTTACAGGGGAGTCACTTCCTGTCA CAAAGAACTCATACGACGAAGTTTTCTCCGGTTCAACCTGCAAGCAAGGCGAGATAGAAGCTCTCGTAATTGCTACTGGTGTGCATACCTTCTTCGGTAA AGCTGCTCATCTAGTGGACAGCACTAACCAAGTTGGACATTTCCAGAAAGTGCTTACTGCTATTGGCAACTTCTGTATTTGCTCGATTGCTGTCGGAATA CTGGTTGAGATTATAGTGATGTATCCCATACAACACCGCAAGTACAGAGATGGGATCGATAACTTGCTGGTTCTCTTGATTGGAGGAATTCCTATTGCTA TGCCGACGGTCTTGTACCCTCCCACGGGCGTTCGTCCCCCTCGGAGCAACCCGGGGGGGGGTATTTCACAAAGAGAATGA
AA sequence Show only first row Show all	>Lus10020149 pacid=23141977 polypeptide=Lus10020149 locus=Lus10020149.g ID=Lus10020149.BGIv1.0 annot-version=v1.0 MQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGK VEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL SHSRFGPLIAPPQRKKEEESQLAKITRDSAKITVEQVHGLMSQERIPIEEVFDQLNCSREGLTSDEGANRLQVFGPNKLEEKKESKLLKFLGFMWNPLSW VMEAAAIMALALANGGGTPPDWQDFIGIVTQLFINSTISFIEENNAGNAAAALMAGLAPNTKSLLLLSIASISSLFQILLQDGRWTEQEAAVLVPGDIIS IKLGDIVPADARLLEGDPLKIDQSDLTGESLPVTKNSYDEVFSGSTCKQGEIEALVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGI LVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLYPPTGVRPPRSNPGGGISQRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	0	1
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	1.7	0.9162
AT5G60670			Ribosomal protein L11 family p...		Lus10037402 [exp]	2.4	0.9245
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	4.0	0.9244
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	4.8	0.8706
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	6.3	0.9128
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	6.9	0.9072
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	7.2	0.9130
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	7.7	0.8914
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	8.8	0.8962
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10021430 [exp]	10.4	0.8961

Compare expression of checked genes

Lus10020149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.