Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31420 472 / 3e-166 C2H2ZnF Zinc finger protein 622 (.1.2) AT2G24500 446 / 2e-156 C2H2ZnF FZF Zinc finger protein 622 (.1) AT1G43860 45 / 9e-05 sequence-specific DNA binding transcription factors (.1) AT1G01930 44 / 0.0002 C2H2ZnF zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026949 [exp] 714 / 0 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2) Lus10009236 [exp] 47 / 3e-05 AT1G01930 576 / 0.0 zinc finger protein-related (.1) Lus10038006 [exp] 46 / 4e-05 AT1G01930 575 / 0.0 zinc finger protein-related (.1) Lus10042780 [exp] 42 / 0.0005 AT1G43860 545 / 0.0 sequence-specific DNA binding transcription factors (.1) Lus10029749 [exp] 42 / 0.0005 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275300 [exp] 513 / 0 AT4G31420 459 / 2e-161 Zinc finger protein 622 (.1.2) Potri.018G006300 [exp] 508 / 1e-180 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2) Potri.002G149800 [exp] 47 / 1e-05 AT1G01930 527 / 0.0 zinc finger protein-related (.1) Potri.002G073200 [exp] 46 / 3e-05 AT1G43860 560 / 0.0 sequence-specific DNA binding transcription factors (.1) Potri.005G186700 [exp] 46 / 4e-05 AT1G43860 513 / 0.0 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020150 pacid=23142077 polypeptide=Lus10020150 locus=Lus10020150.g ID=Lus10020150.BGIv1.0 annot-version=v1.0 ATGACTGCGAAAATGAAAGGCCTAACCTGCAACTCTTGCAACCAGGAATTCCAAAACGATGCTGAGCAAAAGCACCACTACAAGTCTGATTGGCACCGGT ACAATCTCAAACGCAAGGTAGCTGGTGTTCCCGGAGTTACGGAAGCATTGTTTGAGGCCAGACAGTCTGCTATTGCTTTAGAAAAAGACAAGTCTAATGA GACTCCAATGCTCTACACGTGTGTACTCTGCGGCAAGGGTTATCGAAGTTCAAAAGCCCATGCTCAACATGTCAAATCGAGAATCCACATCATGAAAGCG TCTCAGGGGACAAAGCTGGAAGAAGAGGAAACTATAATCAAGCCTCTTCCTCAACGTGTCCTGAAAAAAGCTGAGGAAGAACTAGCTGATATAAGTGAAG AAAGTGACGATGATGAGTGGATAGAAGCTGATCCAGATGAAGTTCTTATTGCTGATGACACCAATGTGGATGAAGCAGGAGCAAGCAAGGATACTATGGA TGAGGATGAAGATGACATTGAGGACTTGTTTGACCCTGCTTGTTGCTTCATGTGTGATCATGAGAATGACAGTATTGAAGCCTGCATGGTGCACATGCAT AAGTATCATGGGTTCTTCGTTCCTGATGTAGAGTATCTGAAGGATCCAAAGGGCCTTCTTACTTATCTTGGTCTCAAGGTAATGAGGGATTTCATGTGTT TATACTGCAATGATCGACGTCAACCATTTAATAGTATGGAAGCAGTTAGGAAGCATATGGAAGCAAAAAGTCACTGCAAAGTCCATTATGGCGATGGGGA TGATGAAGAGGAAGTAGAGTTGGAAGACTTCTATGATTATAGTAGCAGTTACGTTGATGAGGATGGAAAACAGCTGGTTGCTTCGGGTGAAGAAGGCACC ACCCTGGATCTCGGCGGCAGTGGTTCTGAGCTCATTATCACCACCAGGGGTGATGGTAAAATAGCATCTAAAACACTTGGTTCGCGAGAATTCCTGCGCT ACTACCGTCAGAAGCCACGACCACCGGCTAATGATATCGCCATAAGTGCCTCCTTGGCTGCTAGGTACAGGAGCATGGGGTTGGCTACGGTTCAGTCGAA AGAGCAGATAGTGAGGATGAAAGTGTTGAAGGCAATGAAGCGATCAGGTGTGGAGGCTTTGCGCACAAAGATAGGGTTGAAGAACAATGTGATAAGGAAC CTGCCGAAGAATGTCCCGTATTAG
AA sequence Show only first row Show all	>Lus10020150 pacid=23142077 polypeptide=Lus10020150 locus=Lus10020150.g ID=Lus10020150.BGIv1.0 annot-version=v1.0 MTAKMKGLTCNSCNQEFQNDAEQKHHYKSDWHRYNLKRKVAGVPGVTEALFEARQSAIALEKDKSNETPMLYTCVLCGKGYRSSKAHAQHVKSRIHIMKA SQGTKLEEEETIIKPLPQRVLKKAEEELADISEESDDDEWIEADPDEVLIADDTNVDEAGASKDTMDEDEDDIEDLFDPACCFMCDHENDSIEACMVHMH KYHGFFVPDVEYLKDPKGLLTYLGLKVMRDFMCLYCNDRRQPFNSMEAVRKHMEAKSHCKVHYGDGDDEEEVELEDFYDYSSSYVDEDGKQLVASGEEGT TLDLGGSGSELIITTRGDGKIASKTLGSREFLRYYRQKPRPPANDIAISASLAARYRSMGLATVQSKEQIVRMKVLKAMKRSGVEALRTKIGLKNNVIRN LPKNVPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	0	1
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	5.9	0.9380
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	6.2	0.9354
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	8.5	0.9084
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	9.5	0.8946
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	11.0	0.8972
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	12.8	0.8971
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026268 [exp]	13.6	0.8797
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	15.5	0.8932
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10024915 [exp]	16.2	0.9191
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10014830 [exp]	18.0	0.9043

Compare expression of checked genes

Lus10020150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.