Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31410 309 / 1e-105 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 162 / 2e-47 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G08460 153 / 6e-45 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 150 / 9e-44 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G68140 150 / 1e-43 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G15430 112 / 1e-29 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 105 / 5e-27 Protein of unknown function (DUF1644) (.1) AT3G25910 85 / 1e-18 Protein of unknown function (DUF1644) (.1) AT2G26050 72 / 1e-14 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026950 [exp] 481 / 3e-173 AT4G31410 363 / 2e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10022809 [exp] 179 / 4e-54 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 175 / 1e-51 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10020957 [exp] 155 / 2e-45 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 153 / 2e-45 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10004940 [exp] 156 / 3e-45 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 144 / 2e-41 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 144 / 5e-41 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10019436 [exp] 144 / 1e-40 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006400 [exp] 380 / 4e-133 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 375 / 2e-131 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.002G216600 [exp] 161 / 6e-47 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G021800 [exp] 159 / 2e-46 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 155 / 3e-45 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 154 / 5e-45 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G060800 [exp] 156 / 2e-44 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 147 / 6e-42 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.006G154300 [exp] 146 / 2e-41 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.005G172300 [exp] 129 / 2e-35 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10020151 pacid=23142075 polypeptide=Lus10020151 locus=Lus10020151.g ID=Lus10020151.BGIv1.0 annot-version=v1.0 ATGGAGGACATTCAGTTGGATACTGAGTGGGAAGATGTAGCCTGTCCAATATGCTTGGATTTCCCACATAATTGTGTGCTACTTCAGTGTTCTTCGTATG ATAAGGGGTGCAGGCCATTTGTTTGTGATACTGATCACTTGCATTCAAATTGCTTGGACCGCTTTAAGAAGGCCTGCGGTATGCCACCTCCTTCGTTGTC TGAAGGAACTCCGGGAACAAATTCTGAGTCGTCAGAAGCAGATGAAAAAGTCAAACTTGCTTGTCCCTTGTGTAGAGGAGAAGTTACTGGATGGATTGTT GTTCGGAAAGCTCGTTTACGTTTAGATGAGAAGAAGAGGTGTTGTGAAGAACAGAAATGTAAATTTACAGGTGCCTATTTGGAACTGCAGGAGCATGCCA AAAAAGAGCATCCACATGCTCGTCCTGCCAAAATTGACCCTGCTCGTCAGTTGGACTGGGAAAATTTCCAACAATCATCTGAGATCATAGATGTTTTGAG CACGATACATTCGGAAGTACCACGTGGTGTGGTTTTGGGGGATTATGTGATCGAGTATGGGGATGATGATACTACAGATGAGTTTGAGGACTTTCCTAGA AACGAAGGAAACTGGTGGACTTCCTGCATCTTCTATAAGGTATTTGGAAACTTTAGAAACTCAAGAAACAGAAGAAGAGCAAGAATAGCTGATGCCAGAA GAGGAAGTCATCGCTCAAGTTATGATACTTCAAACTCAGATGAGGGATCGGTTACTTCTGTAGGCTTTGCAGAGTATAGATTAGATGAGACAGACGATGA ATATCCAAGTGCTACCAGGGGCTTCTCTGCTCATCACAGGCAAGATAAAAAAAACCCATAG
AA sequence Show only first row Show all	>Lus10020151 pacid=23142075 polypeptide=Lus10020151 locus=Lus10020151.g ID=Lus10020151.BGIv1.0 annot-version=v1.0 MEDIQLDTEWEDVACPICLDFPHNCVLLQCSSYDKGCRPFVCDTDHLHSNCLDRFKKACGMPPPSLSEGTPGTNSESSEADEKVKLACPLCRGEVTGWIV VRKARLRLDEKKRCCEEQKCKFTGAYLELQEHAKKEHPHARPAKIDPARQLDWENFQQSSEIIDVLSTIHSEVPRGVVLGDYVIEYGDDDTTDEFEDFPR NEGNWWTSCIFYKVFGNFRNSRNRRRARIADARRGSHRSSYDTSNSDEGSVTSVGFAEYRLDETDDEYPSATRGFSAHHRQDKKNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	0	1
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	2.2	0.9198
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	2.8	0.9099
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	4.9	0.9151
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	6.2	0.8837
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	6.9	0.8776
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	7.3	0.9119
AT1G27300			unknown protein		Lus10037034 [exp]	8.7	0.8861
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	11.4	0.9047
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	11.5	0.8910
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	16.1	0.9011

Compare expression of checked genes

Lus10020151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.