Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31390 1028 / 0 Protein kinase superfamily protein (.1.2) AT1G79600 347 / 2e-109 Protein kinase superfamily protein (.1) AT3G24190 311 / 9e-95 Protein kinase superfamily protein (.1) AT1G71810 308 / 1e-94 Protein kinase superfamily protein (.1) AT5G24970 292 / 5e-88 Protein kinase superfamily protein (.1.2) AT2G39190 249 / 9e-72 ATATH8 Protein kinase superfamily protein (.1.2) AT5G64940 199 / 2e-54 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 195 / 3e-53 Protein kinase superfamily protein (.1.2.3) AT5G05200 149 / 3e-38 Protein kinase superfamily protein (.1) AT5G24810 130 / 5e-31 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026952 [exp] 1196 / 0 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 359 / 2e-113 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 293 / 9e-89 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 271 / 9e-81 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 280 / 2e-80 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 278 / 9e-80 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10036522 [exp] 269 / 5e-79 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 250 / 3e-72 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037291 [exp] 231 / 3e-66 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275600 [exp] 1063 / 0 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 343 / 9e-108 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 312 / 3e-95 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 306 / 1e-93 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 269 / 8e-80 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 266 / 6e-78 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 207 / 4e-57 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 204 / 7e-56 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 191 / 1e-51 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 144 / 2e-36 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10020152 pacid=23142021 polypeptide=Lus10020152 locus=Lus10020152.g ID=Lus10020152.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTTCATCCCAATTTGATGAACGCTTCCCCTTCCCTCACCAGGCACCGTAGAGATGTACTCTTCCGACCTTCATTTTTCCCCGCCGTCGTTC CAAAGAGGAGTATGCTTCCGTTGGCCGGTCGAGTTTATGCTGCTACTGCAACGGGAGCCGCTGCTCAGCAATTATCCAAGTCCAGTAGTGCCATGGAACA GCTTGACTTCGAACGTGGCGTCTGCGTCCCATTCCGCAAGTACTCTCCTGAGACAGTGAGGAATAAGGTGTTGGAATCGAGAGGTAGCACCTTGTCTCTA ATGTTAAGGGGAGTGGAGATCGTTTGGAACTTGGGATTCTATTGGGCTAACTTGATGTATGATTGCTTCGTCGGAAGGGATGAAGAGGTGGTTCCTTTTC GTGCTCGTCAGCTTAGGAATCTCTTGTGCGATTTAGGGCCTTCCTTCATTAAAGCTGGTCAGGTTCTTGCCAACAGGCCTGACATAATCAGAGAGGATTA TATGAATGAATTGTGTATTCTTCAGGACGATGTTCCTTCATTTCCCAATCAGGCAATAACTAATTGCTCTCTCATTGCTTTCAACATCATAGAAGAAGAA CTAGGTCAACCCCTTGAAGCCGTATTCAGTAAGATTTCATCACGGACAATTGCAGCTGCAAGCTTGGGCCAAGTTTACAGGGCTACCTTAAGGGAAACAG GTGCTGAAGTTGCAATCAAGGTCCAAAGGCCTGACATAGAACCAATAATCTACCGGGATCTTTTCCTTTTCAGAACTCTTGCTTCCTTTCTTAATCGGAT TAGCTTGCAGAAATTGGGATGCAATGCTGAACTTATTGTTGACGAATTTGGGGAAAAGCTTCTTGAAGAGCTTGATTACACCTTGGAAGCCCGAAATATT GAAGACTTTTTGGAGAATTTTGAAGGGGACCCCACTGTGAAGATTCCGATAGTTTACAAAAATCTTTCAGGATCCCGTGTTATAGTTATGGAATGGATTG ATGGTATTCGGTGTACTGACCCACAGGCCATAAAAAATGCTGGGATCGATGTTAATGGATTCTTAACAGTTGGGGTTAGTGCTGCTTTGAGGCAGTTGCT TGAATTTGGTTTGTTTCACGGGGACCCACATCCTGGAAATGTTTTTGCTATGCAAGATGGACGTATTGCATATGTGGATTTTGGGAACGTTGCTGTGCTT AGTCAGCAAAACAAGCAGATATTGATCGATGCTGTTGTTCATGCCGTCAACGAGGACTATGCGGAGATGGCAAATGACTTCACCAGGCTTGGTTTCTTGG CTAGTGGGACAGATGTAGCACCTCTGGTTCCAGCCCTGGAGGCAATTTGGCAGAACTCTGTTGGGAAAGGACTTTCAGATTTTAATTTCAGAAGCGTTAC AGGGAAATTTAATCAGTTGGTTTACAACTACCCGATTCGCATACCGGATAGATTTTCTCTTGTTATCAGATCTTTGTTGACCCAAGAGGGTATTTGTTTC ACCCTGCAGCCAGATTTTAAATTTCTTGAGGTTGCCTACCCATATGTGGCAAAGCGCCTTCTGACAGATCCAAATCCAGCTCTTCGCGAGCGCCTAATAC AGGCAAGTTCTTTTGCTGATTGTTTCTGCACTGGTACAGCCTTGTGGACCGTCTCTGCCATTAGCAATCTCCGAGGTCACATGAAATTCACCATCATTAG CTTTTTGTTACAGGTTCTTTTCAAAGGTGGCGTTTTTCAGTGGAAGCGACTAGAAAATCTAATTTCCCTTGCAAAAGAGAACGTAGCCAAAATGAGCAGC AACCCTGCCATTCAAACAAAGAATACGACAAGGTCCAGAGACTGGCAAATGCAAAGTAAGCTAGACTTGACCGATACCATTAAAGACGGGGCTCGTCTAT TTTTTGTCGACGAGGGAATTCGCAGACAGCTCCTGATGGCTCTCACTGAAGACTCAAAACTTCACATACAAGAGCTTGTGGATGTATATCGACTTGTCGA AGGTGAAATCGATGTACCTACAGTTGCCGTGGAAGTTGTAAGAGATTTTCCAACTATCGTGCGGGATCTGGTTCTGTCGTGGAGCGATGCGATCTTATCC GACAGGCGGTAA
AA sequence Show only first row Show all	>Lus10020152 pacid=23142021 polypeptide=Lus10020152 locus=Lus10020152.g ID=Lus10020152.BGIv1.0 annot-version=v1.0 MELLHPNLMNASPSLTRHRRDVLFRPSFFPAVVPKRSMLPLAGRVYAATATGAAAQQLSKSSSAMEQLDFERGVCVPFRKYSPETVRNKVLESRGSTLSL MLRGVEIVWNLGFYWANLMYDCFVGRDEEVVPFRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNQAITNCSLIAFNIIEEE LGQPLEAVFSKISSRTIAAASLGQVYRATLRETGAEVAIKVQRPDIEPIIYRDLFLFRTLASFLNRISLQKLGCNAELIVDEFGEKLLEELDYTLEARNI EDFLENFEGDPTVKIPIVYKNLSGSRVIVMEWIDGIRCTDPQAIKNAGIDVNGFLTVGVSAALRQLLEFGLFHGDPHPGNVFAMQDGRIAYVDFGNVAVL SQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVAPLVPALEAIWQNSVGKGLSDFNFRSVTGKFNQLVYNYPIRIPDRFSLVIRSLLTQEGICF TLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQASSFADCFCTGTALWTVSAISNLRGHMKFTIISFLLQVLFKGGVFQWKRLENLISLAKENVAKMSS NPAIQTKNTTRSRDWQMQSKLDLTDTIKDGARLFFVDEGIRRQLLMALTEDSKLHIQELVDVYRLVEGEIDVPTVAVEVVRDFPTIVRDLVLSWSDAILS DRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31390			Protein kinase superfamily pro...		Lus10020152 [exp]	0	1
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	1.4	0.8698
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	2.6	0.8795
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	10.7	0.8539
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	11.6	0.8487
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	11.8	0.8508
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	16.4	0.7445
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	17.0	0.8387
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Lus10010457 [exp]	18.5	0.8376
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	23.5	0.8103
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	24.5	0.8255

Compare expression of checked genes

Lus10020152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.