Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10630 775 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G60390 303 / 4e-96 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 303 / 4e-96 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 303 / 4e-96 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 303 / 4e-96 GTP binding Elongation factor Tu family protein (.1) AT1G18070 280 / 5e-86 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT4G20360 145 / 3e-37 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 134 / 1e-33 GTP binding Elongation factor Tu family protein (.1) AT2G31060 80 / 2e-15 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G45332 72 / 8e-13 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026952 [exp] 1210 / 0 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026953 [exp] 441 / 1e-148 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10019918 [exp] 307 / 2e-97 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10023497 [exp] 306 / 5e-97 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10040378 [exp] 306 / 5e-97 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 286 / 2e-89 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10041996 [exp] 282 / 4e-87 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 282 / 3e-86 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10026488 [exp] 266 / 3e-82 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006500 [exp] 795 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.006G275500 [exp] 784 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.010G219500 [exp] 308 / 7e-98 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 308 / 7e-98 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 308 / 7e-98 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 308 / 1e-97 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 307 / 2e-97 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 306 / 6e-97 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 306 / 6e-97 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 306 / 6e-97 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020153 pacid=23142055 polypeptide=Lus10020153 locus=Lus10020153.g ID=Lus10020153.BGIv1.0 annot-version=v1.0 ATGCCGCGGAAAGGGAATTACGGAGTTGATTATGATGAAGAGTTTGATGACTATGAAGATTATGACTATGACAATGACTACAATTACGATGTAGAAAGCA ATGCAAAAGTAGAAGAGCCTGAAGAAAAGACTAATAAGCCAGTGTTGTGGAGTTGCTCTATTTGTACTTATGACAATGAGGAGGGCATGTCCGTATGTGA TATTTGTGGTGTTATTCGCAAACTGGTGGCTGGGGATTTCAAAAGCAGCAATAAGAAAACAGCTGACTCTGACGGCAAATGCTCTGGAGTTTCATTATTG GCAAAGTTTTTTTTTGCATCATCGCCACCTCAGGCATCCCAGAAGGCCATGGTTGGCCAACTGCATAAGGATGACATTTTGATGGAAACCAGGACTGAAT TGCACAAATCTCCTTCCCCAGATGACGTTGTTTCTAGCGGGCTACATTCTTCAAAAACAATTACGAAAGGTAACATAAAGCCTTCAACAATAGCTAAAGA GAAAGGCACAGAAGGTGCACATTCTACCATTCAAAGGTCTGAAAACTCATCCAAGTCAAGAGGGAAACAAGGTAAACTGGATGATAAAAAATTGACAGAC AATGCCGTCGACGGAGAATCAGATTCCAAGATGGCTTTGTCTGAAAAACCAGGAAATCTTATTGCTCCCAATTCCAGGAAAGCTAAGTCAAGTGCAGAAT ACAAACCTGATAAATGGATGCTTCCTGACAAGGCTACAGACGCGTTAACTCAACTGAACCTTGCAATTGTTGGTCATGTAGATTCAGGAAAATCAACGCT GTCGGGAAGACTGCTGCATCTTTTGGGGAGAATTACTTCCAAAGAAATGCACAAATATGAAAAGGAGGCCAAGATACAGGGCAAGGGTTCTTTTGCATAT GCATGGGCTTTAGATGAGAGTCCTGAAGAGCGCGAAAGAGGGATAACTATGAATGTGGCAGTTGCCTATTTTGATTCCAAAAAGTATCACGTTGTGGTCC TTGATTCTCCCGGTCACAAAGATTTTGTTCCAAACATGATATCTGGCGCTACACAAGCGGATGCTGCTGTTCTAGTGATTGATGCATCTAATGGTGCCTT TGAAGCTGGGATAGACAGTTCCAAAGGACAAACCAAGGAGCATGCCCGATTGATTAGAAGTTTCGGCGTGGAACAAATTATAGTTGGTATCAATAAGATG GATGCTGTAGGTTACTCAAAGGATCGGTTTGATTTCATAACTGCACAACTTGGTGCATTTCTCCGTTCTTGTGGGTTCAAGGATTCATGTATTACGTTGA TTCCCTTGAGTGCTATAGAAAACCAAAACTTAGTGGCTGCTCCTTCTGATGCCCGCTTATCATCCTGGTACAGAGGACCTTATTTATTAGATGCAATTGA TTCGCTTCAACCTCCAGCAAGAGATTTTGGGAAACCGCTGCTGATGCCAATATGTGATGTAATAAAATCATCTTCACAAGGTCAGGTGTCAGCCTGTGGT AAATTGGAGGCTGGAGCACTTCGAAGTGGAATGAAGGTGCTGGTGATGCCGTCGGGAGAAGTAGGAACAATAATGTCACTAGAGCGTGATTCACAGGGCT GTGCTGCCGCCAGAGCAGGAGACAACGTGGCCGTCAATCTTCAAGGAGTCGAGGGGAGTAATGTGATGCCAGGAGGTGTCATATGTCACCCTGACTATCC AGTTGGGGTTGCAAATCATTTGGAGTTGAAAGTGCTGGCATTAGAATTATCAATCCCAATCCTCAACGGCTCTCAGGTTGAATTCCACATACATCATGCA CAGGAGGCTGGACGAGTGGCGAAAATTGTATCGCTACTTGATCCCAAGACAGGGAAGCAAACAAAGAGATATCCCCGTTGCCTTGTGTCGAAGCAAAGCG CAGTGCTCGAGGTGGTTTTGAATGAGCCGGTATGTGTAGAAGAATTCTCCAACAGTAGAGCTCTGGGAAGGGTGTTTCTGCGAGCAATGGGCAGAACTAT CGCAGTGGGCGTCGTCACCAGGATTATCCAATGA
AA sequence Show only first row Show all	>Lus10020153 pacid=23142055 polypeptide=Lus10020153 locus=Lus10020153.g ID=Lus10020153.BGIv1.0 annot-version=v1.0 MPRKGNYGVDYDEEFDDYEDYDYDNDYNYDVESNAKVEEPEEKTNKPVLWSCSICTYDNEEGMSVCDICGVIRKLVAGDFKSSNKKTADSDGKCSGVSLL AKFFFASSPPQASQKAMVGQLHKDDILMETRTELHKSPSPDDVVSSGLHSSKTITKGNIKPSTIAKEKGTEGAHSTIQRSENSSKSRGKQGKLDDKKLTD NAVDGESDSKMALSEKPGNLIAPNSRKAKSSAEYKPDKWMLPDKATDALTQLNLAIVGHVDSGKSTLSGRLLHLLGRITSKEMHKYEKEAKIQGKGSFAY AWALDESPEERERGITMNVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASNGAFEAGIDSSKGQTKEHARLIRSFGVEQIIVGINKM DAVGYSKDRFDFITAQLGAFLRSCGFKDSCITLIPLSAIENQNLVAAPSDARLSSWYRGPYLLDAIDSLQPPARDFGKPLLMPICDVIKSSSQGQVSACG KLEAGALRSGMKVLVMPSGEVGTIMSLERDSQGCAAARAGDNVAVNLQGVEGSNVMPGGVICHPDYPVGVANHLELKVLALELSIPILNGSQVEFHIHHA QEAGRVAKIVSLLDPKTGKQTKRYPRCLVSKQSAVLEVVLNEPVCVEEFSNSRALGRVFLRAMGRTIAVGVVTRIIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	0	1
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	2.4	0.8249
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	3.2	0.8253
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	4.0	0.8148
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	7.5	0.7774
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	8.0	0.7943
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	8.0	0.7470
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	8.8	0.7956
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	9.0	0.8163
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	10.9	0.7183
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	16.6	0.8133

Compare expression of checked genes

Lus10020153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.