Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24490 243 / 2e-80 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) AT3G02920 181 / 5e-56 ATRPA32B Replication protein A, subunit RPA32 (.1.2) AT1G07130 41 / 0.0002 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026954 [exp] 486 / 1e-176 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Lus10026953 [exp] 413 / 5e-144 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10019976 [exp] 178 / 7e-55 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2) Lus10015505 [exp] 134 / 5e-37 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10042621 [exp] 46 / 6e-06 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G275700 [exp] 343 / 4e-120 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2) Potri.018G091700 [exp] 184 / 3e-57 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2) Potri.006G167600 [exp] 171 / 4e-52 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2) Potri.006G272000 [exp] 104 / 1e-28 AT2G24490 73 / 4e-17 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain CL0123 [flax] [poplar] HTH PF08784 [flax] [poplar] RPA_C Replication protein A C terminal
Representative CDS sequence Show only first row Show all	>Lus10020154 pacid=23142053 polypeptide=Lus10020154 locus=Lus10020154.g ID=Lus10020154.BGIv1.0 annot-version=v1.0 ATGTTCTCCAGCAGCCAATTTGACGGCAACGCGCCTTTCTACCAGTCATCTCAGCTTCCGGATTCTACCCAATCTCCCGCCAAAAATCGTGAATCTCATG GTTTACTCCCCCTGACGATCAAACAAATTAGCCAGGCTTCACAATCCGGTGATGAAAAATCGGACTTTGCGATCAACGGGGTTGATATCACCAATGTTAC GGTGGTTGGGATGGTGTCTGACAAAGCTGAAAAGATTACTGACGCCGGATTCACCATTGATGACGGGACTGGCCGTATTGGTTGCAAGAGATGGATGAAT GACGGTTTTGACAAAATGGAAGTGGAGGGAATTTCAGAGGGTACATATTTTCGCGTTAATGGGCACTTGAGCTCCTTTCTAGGAACAACTAGCCTCGTTG CTTTCTCTGTGAGGCCAGTGACCAACTTTGATGAGGTCTCTTTCCACTTCATTGACTGCATACACTCTCATATGCTGAATTCTAAAGCGAAGATGCAAGG TGGCGCTACTACTCTGGGAGAATCATCTTTTACTACTCCTGAACGGAAGAGTGAACCAACATCTTTCGCCAGCCAAAAGGACTGTGATCAGTTGGTCATT GAGTGTCTACGACAGTTTTCAGATATGGGACAAGAGAAAGGGATGCACATTGATGAAGTGTACAAACATCTGAAGCTCCCATCAGAGAAGATCAAGGAAT CTATTCGAGCTCTGGAAGATGAAGGTCTCATATACTCAACCATTGATGAGTTCCATTACAAAGCAACTTGA
AA sequence Show only first row Show all	>Lus10020154 pacid=23142053 polypeptide=Lus10020154 locus=Lus10020154.g ID=Lus10020154.BGIv1.0 annot-version=v1.0 MFSSSQFDGNAPFYQSSQLPDSTQSPAKNRESHGLLPLTIKQISQASQSGDEKSDFAINGVDITNVTVVGMVSDKAEKITDAGFTIDDGTGRIGCKRWMN DGFDKMEVEGISEGTYFRVNGHLSSFLGTTSLVAFSVRPVTNFDEVSFHFIDCIHSHMLNSKAKMQGGATTLGESSFTTPERKSEPTSFASQKDCDQLVI ECLRQFSDMGQEKGMHIDEVYKHLKLPSEKIKESIRALEDEGLIYSTIDEFHYKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	0	1
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	2.6	0.9569
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	3.7	0.9405
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	4.2	0.9530
					Lus10017064 [exp]	4.7	0.9178
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	7.1	0.9436
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	7.5	0.9460
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10011306 [exp]	8.1	0.9331
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	11.1	0.9445
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	11.2	0.9284
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	11.8	0.9187

Compare expression of checked genes

Lus10020154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.