Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25480 429 / 3e-150 AtDNMT2, DNMT2 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026955 [exp] 689 / 0 AT5G25480 506 / 3e-180 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250800 [exp] 466 / 6e-165 AT5G25480 529 / 0.0 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10020155 pacid=23141955 polypeptide=Lus10020155 locus=Lus10020155.g ID=Lus10020155.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGTTTTCTGAAACACAAAGATGAGCCATGGCGGGTACTTGAGTTCTATAGTGGCATTGGTGGCATGAGATATTCTCTAGAGAAGGCTTGTG TGAAAGCAGAAGTTGTGCAATCATTTGACATAAATGACACTGCCAATGATGTTTATGAACACAATTTTGGCCATCGCCCTTATCAGGCATGCACAAATAT TTTTCTATTTGCCATTTTTAGCATCCAAGGTAACATTCAGAGTTTGGCAGCTTCCGATCTTGACAACTATAGGGCTCATGCATGGCTTCTTTCCCCTCCT TGCCAACCATACACCCGCCAAGGTCTGCAGAAGCACTCAGGTGATGCCAGGGCTTTTTCATTTCTCAGGATTCTTGAACTTATACAAGAGATAAAACGAC CGCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTCGAGACGTCTGACACACGCACAAAAATGATCGAGATATTAGTCAATACCGATTTTGTTACCCA AGAATTTATCTTGAGCCCATTGCAGTTTGGCGTGCCTTATTCCAGGCCACGTTACTTTTGCTTGGCCAAAAGAAAACCTTTATGCTTCCGACATCGAGTC CTTGATAACCAACTTGTCCGGTCCTGTACCCCATTGCTTGAGCATAACGGAGATATTTTACCCGATGAACTTGATCAACCATCAGATAGCACGGATAAAT TGCTGCAGTCTTGTAAACCTGTAGAACATTTTCTCGAATTCAAGGACTTGAATGATCAGGAAACCACAAGAGCTACGTCCAATAATTTGGAAGTGGATTT GGGAGAGCACGGCGGTGCAAGTCCTAGAATGTCCGATCAGTATTTCGTTCCAGCAAGTCTGATCGATAGATGGGGCAACGCAATGGATATTGTATATCCT GATTCAAGGCGTTGCTGTTGTTTTACCAAGAGTTATTATAGATACGTGAAAGGCACTGGATCGCTTTTGGCTACTATCCAGCCGTTAGAGGAGGGTAAAA CGACGACCCCATTGAAGGAGCAGGGACTAAGATTCTTCACTCCGAGAGAGGTTGAAGATTCTTCCTTCTATCTCGTTTCTGTCACTATATAA
AA sequence Show only first row Show all	>Lus10020155 pacid=23141955 polypeptide=Lus10020155 locus=Lus10020155.g ID=Lus10020155.BGIv1.0 annot-version=v1.0 MEEGFLKHKDEPWRVLEFYSGIGGMRYSLEKACVKAEVVQSFDINDTANDVYEHNFGHRPYQACTNIFLFAIFSIQGNIQSLAASDLDNYRAHAWLLSPP CQPYTRQGLQKHSGDARAFSFLRILELIQEIKRPPSMLFVENVVGFETSDTRTKMIEILVNTDFVTQEFILSPLQFGVPYSRPRYFCLAKRKPLCFRHRV LDNQLVRSCTPLLEHNGDILPDELDQPSDSTDKLLQSCKPVEHFLEFKDLNDQETTRATSNNLEVDLGEHGGASPRMSDQYFVPASLIDRWGNAMDIVYP DSRRCCCFTKSYYRYVKGTGSLLATIQPLEEGKTTTPLKEQGLRFFTPREVEDSSFYLVSVTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	0	1
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	2.4	0.8277
AT3G19780			unknown protein		Lus10040970 [exp]	4.6	0.8082
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	5.3	0.7713
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	6.7	0.7836
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	6.9	0.8136
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	7.2	0.7862
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	13.7	0.7645
AT3G19780			unknown protein		Lus10013425 [exp]	13.8	0.7238
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	13.9	0.7818
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	15.0	0.7685

Compare expression of checked genes

Lus10020155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.