Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24860 179 / 5e-60 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) AT5G10625 175 / 3e-58 unknown protein AT4G31380 157 / 3e-50 FLP1 FPF1-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026956 [exp] 238 / 9e-83 AT5G24860 174 / 5e-58 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10000506 [exp] 149 / 5e-48 AT5G24860 142 / 2e-45 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10037510 [exp] 145 / 1e-46 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Lus10040802 [exp] 94 / 2e-25 AT4G31380 95 / 2e-25 FPF1-like protein 1 (.1) Lus10016534 [exp] 41 / 1e-05 ND 37 / 2e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276100 [exp] 184 / 5e-62 AT5G10625 167 / 5e-55 unknown protein Potri.018G005200 [exp] 183 / 2e-61 AT5G10625 165 / 2e-54 unknown protein Potri.008G209300 [exp] 155 / 3e-50 AT5G24860 140 / 1e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.010G024500 [exp] 153 / 1e-49 AT5G24860 139 / 4e-44 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1) Potri.009G031600 [exp] 119 / 1e-35 AT5G24860 114 / 6e-34 ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, flowering promoting factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020156 pacid=23142036 polypeptide=Lus10020156 locus=Lus10020156.g ID=Lus10020156.BGIv1.0 annot-version=v1.0 ATGTCAGGGGTGTGGGTGTTCAAGAACGGCCTGATACGCCTCGTCGAAAACCCGGGTCATGCCGATCATAATCAAATGGGTGGTGGTCAGGCGACTAGCA CCAGAAGGAAGGCGTTGGTACACTTGCCCACCGGCGAGGTGATTTCGTCCTATTCCTCTCTCGAGCAAATTCTGAGAGAACTGGGTTGGGAGAGGTACTA CGGCGGAGACCCTGACCTTCTTCAGTTCCACAAGAGATCCTCTATCGACTTGATATCTCTCCCGCGCGACTTCAACAAGTTCAACTCCGTCTACATGTAC GACATCGTGGTCAAGAACCCTAACCTCTTCCACGTCCGTGACGTTCACTACTAA
AA sequence Show only first row Show all	>Lus10020156 pacid=23142036 polypeptide=Lus10020156 locus=Lus10020156.g ID=Lus10020156.BGIv1.0 annot-version=v1.0 MSGVWVFKNGLIRLVENPGHADHNQMGGGQATSTRRKALVHLPTGEVISSYSSLEQILRELGWERYYGGDPDLLQFHKRSSIDLISLPRDFNKFNSVYMY DIVVKNPNLFHVRDVHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10020156 [exp]	0	1
AT2G42040			unknown protein		Lus10021062 [exp]	2.0	0.6844
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	10.9	0.6807
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	16.9	0.6504
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	20.9	0.6440
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	25.4	0.6310
					Lus10027526 [exp]	25.8	0.5943
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	28.9	0.6243
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	31.2	0.6243
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	33.3	0.6243
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10028418 [exp]	34.8	0.6200

Compare expression of checked genes

Lus10020156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.