Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24450 122 / 3e-33 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G12660 119 / 3e-32 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G45470 113 / 6e-29 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 90 / 2e-20 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G31370 87 / 4e-20 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT4G12730 88 / 1e-19 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 82 / 8e-18 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G46550 50 / 4e-07 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026957 [exp] 384 / 5e-136 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10042446 [exp] 172 / 1e-52 AT2G24450 105 / 7e-27 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10038004 [exp] 117 / 4e-32 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10026223 [exp] 116 / 6e-32 AT4G31370 66 / 5e-13 FASCICLIN-like arabinogalactan protein 5 precursor (.1) Lus10009235 [exp] 116 / 4e-30 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10001178 [exp] 86 / 7e-19 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 85 / 2e-18 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 84 / 2e-18 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 84 / 3e-18 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005100 [exp] 141 / 1e-40 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 137 / 8e-39 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G037800 [exp] 126 / 2e-34 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.014G071700 [exp] 117 / 3e-30 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.011G093500 [exp] 84 / 2e-18 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 84 / 2e-18 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.001G367900 [exp] 80 / 7e-17 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10020158 pacid=23142023 polypeptide=Lus10020158 locus=Lus10020158.g ID=Lus10020158.BGIv1.0 annot-version=v1.0 ATGGGAACCAAGAATTTGGTATTCCTCGGCATAGTTTGCCTACTCTCCACCTGCTTCTCCACAAGGGTGGTGTACGCCGCCTCCTACAACATCACCGAGG TACTCGCCAAATACAGCGAATACTCTCAATTCAATGAACTCCTCACCTCAAGCGGCCTAGCCAAGACAATTAACTCCAAAGAGAGAACCATCACCGTCTT AGTGGTCAACAATGGCGGCATTGGTTCCCTTTCGGGCAAGCCAGATGCCACAGTGAAAGCCGTCTTGAGCCTACACATCGTCCTGGACTACCTCGACAAG AACAAGATCCAGTCCCTGAACAAGTCCACCACTATGACGACATTGTACCAAGAAACCGGCAATGCCAAGAACGACGAAGGATTCCTCAATGCCACCAAGA GTAACGATAACAACAACCAATTGATGTTCGGTGATGGCAAGGAAAATGCTCAGCTATCATCCAGCTACATGAAGGTGGTGACCACACAGTCTTCCCTCTA CTCCATTGTTGAAGTAAGCAGCGTGATCCAAGCTCCATGGGCTGAAAATCTCCATGGCTCTCCACATAAGGCTCCATCTTCCAGCCCAGACAGTGCCCCT GCGCCTTCTCGTAGACACAGGAAGATTGCTCCTTCTTCTTCCGACTCCCCTCCTGTTCCCTCAGACTCCAAAAATGCTGATGATTCCTCAGCTCCATCAC CAGGGACGAGCTCTGCATCTTCTTTGCACGCTGCAGCTGGTGGCCTCGCTGCTTCCCTTGCTATCACGTTCATGATGAGTTTCTAG
AA sequence Show only first row Show all	>Lus10020158 pacid=23142023 polypeptide=Lus10020158 locus=Lus10020158.g ID=Lus10020158.BGIv1.0 annot-version=v1.0 MGTKNLVFLGIVCLLSTCFSTRVVYAASYNITEVLAKYSEYSQFNELLTSSGLAKTINSKERTITVLVVNNGGIGSLSGKPDATVKAVLSLHIVLDYLDK NKIQSLNKSTTMTTLYQETGNAKNDEGFLNATKSNDNNNQLMFGDGKENAQLSSSYMKVVTTQSSLYSIVEVSSVIQAPWAENLHGSPHKAPSSSPDSAP APSRRHRKIAPSSSDSPPVPSDSKNADDSSAPSPGTSSASSLHAAAGGLAASLAITFMMSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	1.7	0.7755
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	4.1	0.8015
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10000138 [exp]	11.0	0.7009
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	15.2	0.7370
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	17.1	0.7464
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	18.3	0.7840
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	19.4	0.7593
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	25.5	0.7272
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	28.5	0.7126
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	28.8	0.7218

Compare expression of checked genes

Lus10020158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.