Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31350 391 / 1e-133 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 367 / 4e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT2G19160 367 / 5e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 360 / 5e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 360 / 7e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 199 / 5e-59 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 193 / 1e-56 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 192 / 4e-56 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G11730 191 / 7e-56 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 191 / 8e-56 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026959 [exp] 661 / 0 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10006952 [exp] 414 / 3e-142 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 412 / 2e-141 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 201 / 2e-59 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 201 / 2e-59 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 202 / 5e-58 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 187 / 7e-54 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 186 / 1e-53 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 185 / 1e-53 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143900 [exp] 406 / 3e-139 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 399 / 3e-136 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 207 / 4e-62 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 198 / 1e-58 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 197 / 3e-58 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 195 / 2e-57 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 193 / 2e-56 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 192 / 4e-56 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 189 / 7e-55 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 187 / 3e-54 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10020159 pacid=23142020 polypeptide=Lus10020159 locus=Lus10020159.g ID=Lus10020159.BGIv1.0 annot-version=v1.0 ATGAAGACAAGCAGCCGGCCGCGATGGTGGGTGGGGATGAGGGATTACCTAACGTCGCATCCTAACTCTAGACAACGACAACACGTGAAGAGGCCGCCAA AGTGGATCCTTTTGCTCTTCTTCTTCCTTGCCGCAACTGTTTTCATGTTGGGTGTCTACTACGTTTTCCAACCTAGACACCCTATCTCCAACCCTCCTTG CTCTGTATTTGCTCCCGGAGGGTGCGCCACTTACGATGGGACCCGACTCGTTCCGGCTCGAAAGCTCACCGACGAGGAGATCACCGCCCAGGTTGTCATC CGCGAAATACTCAACAACCCTCCTCCCGTCTCGAAAAACCCAAAGATCGCTTTCATGTTCTTGACTCCTGCTTCCCTTCCTTTCGAAAAGCTCTGGGAGA AGTTCTTTGAGGGTCATGAAGACAGATTTACTGTCTATGTACATTCATCAAGGAATAAACCGGCTCATATCAGTCGCTATTTCGCTGGCCGAGACATCCA TAGTGACAAGGTGGAATGGGGGAAAATTTCAATGGTTGATGCTGAAAGAAGACTACTAGCTCATGCACTGCTGGATGCAGACAACCACCAATTTATCTTG CTTTCTGACAGTTGCATACCACTCCGTACCTTTAACTATGTGTATAACTATCTGATGTTCACTAACGTCAGCTATATAGACAGCTTTGTGGATCCCGGTC CTCATGGAAACGGAAGATACTCAGAGCACATGTATCCCGAAGTTCAATTTGGTGATTTTCGAAAGGGTGCACAATGGTTCTCGATGAAGCGGCAACACGC CATCGTAGTAATGGCGGACAGCTTATACTACAGAAAGTTCAGGCTTTACTGCAGACCAAATATGAATGGGAAAAATTGCTATGCCGATGAGCATTACCTC CAAACATTTTTCACTATGATTGACCCTCATGGAATTTCAAAGTGGTCCGTCACCCATGTCGACTGGTCCGAAGGAAAATGGCATCCGCGGTCGTATAGAT CCGCTGATATCACTTACGACCTCCTCAAAAACCTTACCCGTGATATGCAAGTGTTGGAAGCGCACCTCGGAGTTGATGATGAGCGCATAAACACTGTCCT TAAACACTTGAACCCTTTTGGACAAAAATCAGAGAATATTTCAAAGCCTTCAGAGCGACAAGAAGGCATCAACTTCAAGGAGTTCGGATCGGAAGACATA ATCAAGATTGACAGATCGATTTCTTCGACGGTTCTCGGTGAAATTAGCAAACAGTGCAAGTCATTTAAAGTGAGGGCTGATCAGGTGAAACTTGGTTTGG AGAAAGCTATCCCTGGTATAGTGGTTGAACTCAATCCTGAAAAGCCTAGAAGGGGATGCTTTGAGGTACGAGAGGAGGGAGGGGAAGTCTTCATCAGTCT CGAGAATATGCCGCGCCCATTCAAAAAAATGAAGGATCTTGACATGGATGAAGTTGTGGCAGACATTGTTAGTAAGATCAAATGA
AA sequence Show only first row Show all	>Lus10020159 pacid=23142020 polypeptide=Lus10020159 locus=Lus10020159.g ID=Lus10020159.BGIv1.0 annot-version=v1.0 MKTSSRPRWWVGMRDYLTSHPNSRQRQHVKRPPKWILLLFFFLAATVFMLGVYYVFQPRHPISNPPCSVFAPGGCATYDGTRLVPARKLTDEEITAQVVI REILNNPPPVSKNPKIAFMFLTPASLPFEKLWEKFFEGHEDRFTVYVHSSRNKPAHISRYFAGRDIHSDKVEWGKISMVDAERRLLAHALLDADNHQFIL LSDSCIPLRTFNYVYNYLMFTNVSYIDSFVDPGPHGNGRYSEHMYPEVQFGDFRKGAQWFSMKRQHAIVVMADSLYYRKFRLYCRPNMNGKNCYADEHYL QTFFTMIDPHGISKWSVTHVDWSEGKWHPRSYRSADITYDLLKNLTRDMQVLEAHLGVDDERINTVLKHLNPFGQKSENISKPSERQEGINFKEFGSEDI IKIDRSISSTVLGEISKQCKSFKVRADQVKLGLEKAIPGIVVELNPEKPRRGCFEVREEGGEVFISLENMPRPFKKMKDLDMDEVVADIVSKIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	0	1
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	4.6	0.9444
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	11.2	0.8945
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	14.2	0.9324
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	14.5	0.9151
					Lus10024189 [exp]	14.8	0.9060
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10023448 [exp]	15.3	0.9164
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	21.5	0.9246
AT1G11120			unknown protein		Lus10039796 [exp]	21.6	0.9223
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	22.0	0.9300
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008927 [exp]	25.3	0.8665

Compare expression of checked genes

Lus10020159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.