Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45770 436 / 7e-154 Polyketide synthase, enoylreductase family protein (.1.2) AT1G23740 59 / 2e-09 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G49670 54 / 7e-08 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT4G13010 53 / 9e-08 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 44 / 0.0001 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT5G37980 42 / 0.0003 Zinc-binding dehydrogenase family protein (.1) AT5G38000 42 / 0.0004 Zinc-binding dehydrogenase family protein (.1) AT1G65560 42 / 0.0004 Zinc-binding dehydrogenase family protein (.1) AT5G37940 41 / 0.0007 Zinc-binding dehydrogenase family protein (.1) AT3G15090 41 / 0.0008 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030873 [exp] 64 / 2e-11 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 60 / 1e-09 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 48 / 5e-06 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 48 / 6e-06 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10027904 [exp] 47 / 1e-05 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10002406 [exp] 47 / 2e-05 AT1G49670 948 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Lus10003159 [exp] 46 / 2e-05 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 45 / 2e-05 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 45 / 4e-05 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233300 [exp] 436 / 3e-154 AT3G45770 563 / 0.0 Polyketide synthase, enoylreductase family protein (.1.2) Potri.008G161600 [exp] 58 / 2e-09 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 57 / 6e-09 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 53 / 8e-08 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G002500 [exp] 51 / 4e-07 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 49 / 2e-06 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 47 / 6e-06 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.006G070000 [exp] 47 / 1e-05 AT5G16990 341 / 1e-116 Zinc-binding dehydrogenase family protein (.1) Potri.010G177700 [exp] 45 / 3e-05 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 45 / 5e-05 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10020160 pacid=23141984 polypeptide=Lus10020160 locus=Lus10020160.g ID=Lus10020160.BGIv1.0 annot-version=v1.0 ATGACGCCGATGATGCGATCACTGGCAACTAGAGCTCTCAACCCTCCGTCACTATCTCTATTAAATGTCTTGCGTCGGGTACATGTTCGCAGGACTCATC CTCAATCTGTTCGTGCGTTCTCTGCTCTCATGGCTCCGGCGTCCAAGGCCGTTGTTTACGATCAGCACGGGCCTCCTGATTCTGTCATTCGGATGGTTGA GTTGCCGCCAGTTGAAGTTAAAGAGAACGACATTTGCGTTAAAATGCTAGCTGCTCCCATCAATCCTTCCGACATCAATCGAATTGAAGGAGTATATCCT GTACGGCCGCAGGTGCCTGCAGTTGGAGGATATGAGGGGGTCGGGGAGGTGTATTGTGTGGGCTCAGCGGTGAAGGACTTTTCTCCCGGCGATCGTGTCA TTCCATCTCCTCCTTCTTCCGGGACATGGCAGACTTATGTTGTGAAGGAGCAGGGTGTCTGGCACAAGATTGATAAAGATTCCCCAATAGAATATGCTGC TACAATTACTGTCAATCCGCTGACTGCTTTGAGAATGCTTGAAGACTTCACTACCCTAAATGCAGGGGATTGTGTTGTCCAAAATGGCGCTACAAGTATT GTAGGGCAGTGCGTTATCCAGCTTGCCCACCTTCGTGGCCTCCATAGCATTAACATAATAAGGGACAGGTCTGGGTCAGATGAAGCCAAGGAAATGTTGA AAAAGCTTGGTGCTGATGAAGTTTTCTCTGAAAACGAATTGGATGTCAAGAATGTGAAGAGTCTATTGGCCGGTCTGCCAGAATCTGCTTTGGGATTCAA CTGCGTTGGTGGAAATGCTGCTTCCTTGGTTCTCAAATTTTTGAGACAGGGAGGAACAATGGTAACTTACGGCGGCATGTCAAAAAGGCCTGTCACAGTA CCAACTTCAGCCTTTATATTCAAAGCAAGTCCAATCTCCCCAGATCCTAAGTAG
AA sequence Show only first row Show all	>Lus10020160 pacid=23141984 polypeptide=Lus10020160 locus=Lus10020160.g ID=Lus10020160.BGIv1.0 annot-version=v1.0 MTPMMRSLATRALNPPSLSLLNVLRRVHVRRTHPQSVRAFSALMAPASKAVVYDQHGPPDSVIRMVELPPVEVKENDICVKMLAAPINPSDINRIEGVYP VRPQVPAVGGYEGVGEVYCVGSAVKDFSPGDRVIPSPPSSGTWQTYVVKEQGVWHKIDKDSPIEYAATITVNPLTALRMLEDFTTLNAGDCVVQNGATSI VGQCVIQLAHLRGLHSINIIRDRSGSDEAKEMLKKLGADEVFSENELDVKNVKSLLAGLPESALGFNCVGGNAASLVLKFLRQGGTMVTYGGMSKRPVTV PTSAFIFKASPISPDPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	0	1
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10027388 [exp]	3.3	0.8916
AT2G15000			unknown protein		Lus10026596 [exp]	5.2	0.9173
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	9.5	0.9162
AT1G51160			SNARE-like superfamily protein...		Lus10027541 [exp]	9.9	0.8933
AT5G12470			Protein of unknown function (D...		Lus10003180 [exp]	11.2	0.8475
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	11.6	0.9121
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	12.5	0.9120
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	19.7	0.8908
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	21.7	0.8957
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	23.6	0.9091

Compare expression of checked genes

Lus10020160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.