Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19260 155 / 3e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G01460 49 / 1e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 44 / 0.0002 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT1G50620 44 / 0.0002 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G20280 43 / 0.0005 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G77250 42 / 0.001 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G12400 42 / 0.001 DNA binding;zinc ion binding;DNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015537 [exp] 79 / 8e-16 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020012 [exp] 80 / 1e-15 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10027346 [exp] 50 / 5e-06 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10014918 [exp] 49 / 7e-06 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10008796 [exp] 49 / 8e-06 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10022224 [exp] 45 / 0.0001 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10013301 [exp] 43 / 0.0005 AT3G20280 273 / 1e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277400 [exp] 288 / 8e-93 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142300 [exp] 176 / 1e-48 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G075400 [exp] 168 / 4e-45 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G072580 [exp] 52 / 5e-07 AT3G01460 705 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.012G018300 [exp] 50 / 2e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 49 / 5e-06 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.002G076900 [exp] 46 / 5e-05 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.009G049100 [exp] 44 / 0.0002 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.005G183700 [exp] 43 / 0.0005 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.001G358900 [exp] 42 / 0.001 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10020162 pacid=23142068 polypeptide=Lus10020162 locus=Lus10020162.g ID=Lus10020162.BGIv1.0 annot-version=v1.0 ATGGTGCTCCAACGCTCAGTTGAATCACCTTCATCTTACATTTCGAATTGCAAGAAGGAAGATGTGGTGTGGGATTGGATCCCTGAGAAGCAAGCCTGGA ATACTTGTTCAGACCCTGAAGAATCTCCTAAAGAGAATTTAAATATCCCATCTAATTGCACTTCTTTTGTGTTTCCTGGGTCGAATGTCCAGTGCAAGAG AAGAAAACTCCACGGGAACTCTCTAATTGTTTTTGCTGAGACAGCTCATTTCGATGAGCTCGATCGCGACTCCCTGCAGAAAAAAACTGCATGTGGTTCG GGTGATAGGGTTGAGTCCCTTAAATTGCAGTCGCGGCAATGCGATGGAGACGTTATTCTGACGAACCAAGAACCGAAACCTGCTTATAAATCTTGGAGGA CAAGAAGTAGCAATGATGGGAAGAGTCCAGATTCAGAGCCGGAGGCTTCAATAGATGATTCCCAGAGTAGAGATATCTGCATTGCTTTACTTAGAAGTGA TGGCTTTCCTCTGACAGATGGTTCCACAAGCAATTCTTTTCCAGTTTCCACAAATAGTTGCCAGTCATGTGAGGCATGTGGTAATTTGGAGAGTATTGCA GACATGATAATATGCGATGGATGTGAGGAGGCATTTCATGTGGCTTGCAGTGGTGCTACCAAAGAGGCATTGGATGCTGATGAATGGTTTTGCCAATCTT GTTCGAAATTGAACGGCAAATATGTATTAGGAACCCCTCACGTTCGTTCACAGATCAAGAGAGGTTGGAGTTTGGGTTCCACCCACCGGTTAGGTCCGAT AGCATGTATGTTGAAGTATCCTGATTATACTTCCAAGGTGAGGGTTGGGGACCACTTTCAGGCAATAGTTCCTGAATGGCATGATAAAACTACTGAGGAT TCTGATAGCTTTTGTGAGCCAATTGAAATGGATCCAATTGAGACTCTTGGATTACATGGGTGCGCTAAGGACAGTCTTTTAAAGCCAAACTCCGTGAGTA ATTGGCTGCAATGTCAAGAGATCCTCGATGATCAACTCAGCGGTGCAATATGTGGGAAGTGGCGCAGGGCACCATTCTCTGAAGTCCAAACTAATGATTG GGATTGTTCTTGTGCTCTTCCATGGGATCCATTCCATGCAGATTGCGTTGTACCCCAGGAGATGGAAACTGGAAAAGTATTAGCGCAACTGAAATATGTA GAGCAGGTATGTTCTCTGTACTGTTTGAAGAAGGTTAAGAGCATCCAATTCACTGCTCTGGGAATAGTCTATGAATCTACTATGTCACTGTTTTTACCTT TACCGCTAGGAAGAGAAGTTGATCATACTAAGTGA
AA sequence Show only first row Show all	>Lus10020162 pacid=23142068 polypeptide=Lus10020162 locus=Lus10020162.g ID=Lus10020162.BGIv1.0 annot-version=v1.0 MVLQRSVESPSSYISNCKKEDVVWDWIPEKQAWNTCSDPEESPKENLNIPSNCTSFVFPGSNVQCKRRKLHGNSLIVFAETAHFDELDRDSLQKKTACGS GDRVESLKLQSRQCDGDVILTNQEPKPAYKSWRTRSSNDGKSPDSEPEASIDDSQSRDICIALLRSDGFPLTDGSTSNSFPVSTNSCQSCEACGNLESIA DMIICDGCEEAFHVACSGATKEALDADEWFCQSCSKLNGKYVLGTPHVRSQIKRGWSLGSTHRLGPIACMLKYPDYTSKVRVGDHFQAIVPEWHDKTTED SDSFCEPIEMDPIETLGLHGCAKDSLLKPNSVSNWLQCQEILDDQLSGAICGKWRRAPFSEVQTNDWDCSCALPWDPFHADCVVPQEMETGKVLAQLKYV EQVCSLYCLKKVKSIQFTALGIVYESTMSLFLPLPLGREVDHTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	0	1
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	1.0	0.9489
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	2.0	0.9243
AT1G76480			unknown protein		Lus10006035 [exp]	4.2	0.9264
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	4.9	0.9010
AT2G32760			unknown protein		Lus10037826 [exp]	5.1	0.9004
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	6.3	0.9296
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	6.5	0.9080
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Lus10020067 [exp]	6.7	0.8770
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	6.7	0.8993
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	7.7	0.9138

Compare expression of checked genes

Lus10020162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.