Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26000 386 / 3e-130 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 262 / 5e-81 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT1G51580 109 / 3e-25 RNA-binding KH domain-containing protein (.1) AT5G15270 88 / 2e-18 RNA-binding KH domain-containing protein (.1.2) AT5G64390 79 / 2e-15 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 75 / 3e-14 RNA-binding KH domain-containing protein (.1.2) AT1G14170 68 / 6e-12 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 64 / 2e-10 RNA-binding KH domain-containing protein (.1) AT5G53060 56 / 4e-08 RNA-binding KH domain-containing protein (.1.2) AT5G04430 52 / 3e-07 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026963 [exp] 617 / 0 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10006565 [exp] 274 / 5e-86 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10005530 [exp] 273 / 2e-85 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10000120 [exp] 89 / 5e-20 AT3G04610 132 / 1e-35 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 93 / 7e-20 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 92 / 1e-19 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 91 / 4e-19 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 89 / 1e-18 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 85 / 2e-17 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G004000 [exp] 471 / 8e-164 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.006G277200 [exp] 460 / 1e-159 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.005G056100 [exp] 275 / 9e-87 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.013G043000 [exp] 275 / 1e-86 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.014G045000 [exp] 89 / 3e-19 AT5G15270 106 / 2e-25 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 90 / 5e-19 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 90 / 8e-19 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 86 / 1e-17 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 85 / 3e-17 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 84 / 7e-17 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10020163 pacid=23141961 polypeptide=Lus10020163 locus=Lus10020163.g ID=Lus10020163.BGIv1.0 annot-version=v1.0 ATGGACTCGGGACCAGCGGCCATAGTAGATCAATCGGAACATGACGCCCCTCCAGGGTTGGTGACGGCGACAGCCGAGGAGGGAATCGAAGCGGTGGGAG GGTCGGAGGAGGCCAATGAAGGTATGGAAGTAGCGCCGTTGCAGACGGAGGCCGCCGCGGCTGCGCAACAAGCTCCTCCGAAGTGGCCTGGATGGCCAGG GCATAACGTGTTCAGGCTTATAGTTCCGGTGGCCAAAGTAGGTAGCATTATTGGAAGAAAGGGCGAGCTCATCAAAAAGATGTGCGAGGAAACTCGAGCC AGAATCCGCATCCTTGAAGCCCCCCAGAGTACTCCCGATCGAATTGTTCTGATTTCTGGAAAAGAAGAACCAGAAGCACCACTATCACCTGCAATGGATG CTGTGTTACGAGTATTCAAACGTGTTAGTGATCTGTCTAGTGTTGAAGGTGCCAACGCAACTGCAGCTGCTGGTGCTGCGTTTGGTTCCATTAAGTTATT AGTTGCAAGCTCTCAAGCAATTAACTTAATTGGAAAGCAAGGGTCTACAATCAGATCAATACAGGAGAGTAGTGGTGCATCTGTGCGTGTGTTATTAGAA GATGAATCACCTTCCTATGCTGCGCCAGATGAGCGTCTTGTAGAGATACATGGTGAATCTCTGAAGGTTCTTAGTGCATTAGAATCAGTAATTAGACAAC TGAGGAAGTTCTTGGTTGACAGTAGTGTCATTCCCATATTTGAGAAAACTTACACTTCAGCAATTTCACAGGAGCGCTCTGCTGATGCCAAACTTGATAG AGTTCAGTCCTCACTGCAGTCTGTTTCTGCTTCTCAGCCAGGAATGGGTTATGACTATTCCCTGTCATTAAAGCGTGATCCTTCGCTATTCGACTCTCAG ACACGAGTTGAACAAAGAATCTTACAATCTGGACTCTCTCTATACGGACAAGGGCATGCACTCGGATTGCGTTCGTCGGCTCTTGGCCATGCTTCTGTTC CCATCGTTACCCAGGTGACACAAACTATGAAAGTTCCCCTCTCATATGCCGGGGATATCATAGGAGTTGATGGGTCAAATATTGCCTACATTCGTCGTGT CAGCGGAGCCGTTCTGACAATCCAAGAGAGTAGAGGTTTTCCAGATGAGATCATTGTAGAAATAAAGGGAACTACTTCTGAAGTTGACAAGGCCCAACTG CTAATTCAGGAGTGTGTTAGCAACCATCACAAGGATCCGATGTTGGGGTTAGGTTCGTACGGGAAGACAGAAGCAGGATATAGTTCGTACTCACAGTTGC CAGAAAGCAGCTATTCATCTTATTCTCCAAATCTAGGGGCAGGAGGAGGCGGCAGCGGCGGGTATGGATCCCCAGGTTTAGGATTAGGAGGAGGGGGAGG GTATAGTGGTTACAGATATTGA
AA sequence Show only first row Show all	>Lus10020163 pacid=23141961 polypeptide=Lus10020163 locus=Lus10020163.g ID=Lus10020163.BGIv1.0 annot-version=v1.0 MDSGPAAIVDQSEHDAPPGLVTATAEEGIEAVGGSEEANEGMEVAPLQTEAAAAAQQAPPKWPGWPGHNVFRLIVPVAKVGSIIGRKGELIKKMCEETRA RIRILEAPQSTPDRIVLISGKEEPEAPLSPAMDAVLRVFKRVSDLSSVEGANATAAAGAAFGSIKLLVASSQAINLIGKQGSTIRSIQESSGASVRVLLE DESPSYAAPDERLVEIHGESLKVLSALESVIRQLRKFLVDSSVIPIFEKTYTSAISQERSADAKLDRVQSSLQSVSASQPGMGYDYSLSLKRDPSLFDSQ TRVEQRILQSGLSLYGQGHALGLRSSALGHASVPIVTQVTQTMKVPLSYAGDIIGVDGSNIAYIRRVSGAVLTIQESRGFPDEIIVEIKGTTSEVDKAQL LIQECVSNHHKDPMLGLGSYGKTEAGYSSYSQLPESSYSSYSPNLGAGGGGSGGYGSPGLGLGGGGGYSGYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10020163 [exp]	0	1
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	2.4	0.8799
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	15.5	0.8762
AT3G25545			unknown protein		Lus10013064 [exp]	23.9	0.8673
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	24.4	0.8744
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	29.3	0.8503
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	30.2	0.8588
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	31.8	0.8695
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	36.4	0.8644
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	44.7	0.8539
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	55.1	0.8112

Compare expression of checked genes

Lus10020163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.