Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24840 412 / 8e-148 tRNA (guanine-N-7) methyltransferase (.1) AT5G17660 62 / 5e-11 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026965 [exp] 491 / 7e-179 AT5G24840 412 / 2e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10015923 [exp] 71 / 4e-14 AT5G17660 366 / 5e-128 tRNA (guanine-N-7) methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003900 [exp] 434 / 3e-156 AT5G24840 426 / 7e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.006G277100 [exp] 429 / 2e-154 AT5G24840 427 / 1e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.013G070800 [exp] 64 / 1e-11 AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1) Potri.016G091800 [exp] 42 / 0.0004 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02390 [flax] [poplar] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020164 pacid=23142005 polypeptide=Lus10020164 locus=Lus10020164.g ID=Lus10020164.BGIv1.0 annot-version=v1.0 ATGGCAGAAACGGAGCTAAACCCAACTTTCAGCAGGACGACTGGCTTGCCTAGGAAGCGATTCTATCGTGCACGAGCTCACAGCAATCCATTAAGCGATT CGCATTTCCCTGTTCCGGTCTCCCCTGCTCATGTTGACTACTCCATTCATTTCCCTGATCAAGCTAGTAGCTCCAAAAGGATTCAATTCGTCGATGTCGG CTGTGGGTTCGGGGGATTGTTGATTAGTCTCGCTACCCTTTTCCCCGAAACCTTGATGGTAGGGATGGAGCTTAGAGACAAAGTTACAGAGTATGTCAAG GAACGAATCCTTGCTCTGAGGACGACAAGCCCTGGACAGTATCAAAACGTTTCGGTGGTCCGGACGAATTCAATGAAGTACATCCCGAATTACTTTGGTA AAGGACAGCTATCGAAGATGTTCTTTCTATTCCCCGATCCTCACTTCAAGGAGAAGAATCACCGCAGGAGAGTGATTAGCCCGCACTTGTTGGATGAGTA TGCTTATGTTCTTCAAGTTGGTGGGATTATCTATACTATCACGGATGTGGAGGAACTCGGGGAGTGGATGAAGACATGTTTGGAACAGCACCCCTTGTTT GAGCGACTCGGTGAAGCAGAACTTGAATTGGACCCTGTTGTTAAGCTCTTGAGCACTGCTACTGAAGAAGGTCAGAAGGTTGCTAGGAATGAAGGCCAGA CATATCAGGCGGTGTATAGACGAATTGCAGCTTCCAATTGA
AA sequence Show only first row Show all	>Lus10020164 pacid=23142005 polypeptide=Lus10020164 locus=Lus10020164.g ID=Lus10020164.BGIv1.0 annot-version=v1.0 MAETELNPTFSRTTGLPRKRFYRARAHSNPLSDSHFPVPVSPAHVDYSIHFPDQASSSKRIQFVDVGCGFGGLLISLATLFPETLMVGMELRDKVTEYVK ERILALRTTSPGQYQNVSVVRTNSMKYIPNYFGKGQLSKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLQVGGIIYTITDVEELGEWMKTCLEQHPLF ERLGEAELELDPVVKLLSTATEEGQKVARNEGQTYQAVYRRIAASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	0	1
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10013047 [exp]	1.0	0.8653
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	4.2	0.8540
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	4.5	0.8386
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	4.6	0.8454
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	4.9	0.8377
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	5.7	0.8333
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	6.5	0.8356
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	8.8	0.8243
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	8.9	0.8419
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	10.5	0.8284

Compare expression of checked genes

Lus10020164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.