Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31340 356 / 1e-119 myosin heavy chain-related (.1.2) AT2G24420 345 / 2e-115 DNA repair ATPase-related (.1.2) AT4G30090 116 / 1e-28 EMB1353 embryo defective 1353 (.1) AT1G28410 47 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026967 [exp] 679 / 0 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10036424 [exp] 449 / 3e-156 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2) Lus10041099 [exp] 444 / 3e-154 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276900 [exp] 453 / 2e-157 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.018G003700 [exp] 448 / 2e-155 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G076700 [exp] 127 / 1e-32 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020166 pacid=23142010 polypeptide=Lus10020166 locus=Lus10020166.g ID=Lus10020166.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTAAGTTCCTAGCGTTCTCGTTCTTCCTCGCCCTACTCCTGTCTGCTGTTTGGGCCGATGTCGACGGCGATGTTGGTAAGCCGGCGATTC AAGTTACTGAATCTTCAGACCTCCACTCTTCTGCTCTGAAGTTCGAACTTGACCAAGCCAAGTCCAAGATCCAGGAACTTGAGTCCCAGTTTGAAAGGAA AGCAAAGGAACTGAAGGAGAAAGAGGAGAAATTAGCTAAGAAGGAGAAACTCATAAAAGAGAAGGCTGATAGCATTACATCATTGCAGAGTGAAATATCC TCCCTTCAGAAAAAAGGGAAGTTGGACTCTGCTGAGCAGCTGAACAAGGCCAATGCACAAGTTGTGGACTTAGAGAAGCAGCTTGATAGACTCAAAGAAG AATTTGAAGCACAAAATACTGAAAAGGAGGCCCTCGAGAATAGAGCAAGTAAAGCTGAAACAAAACTTGATGAATTGAACTCAAAACTTAAGGATCTGCA AAACATCAGCGATGAGCAGAAGAGCAAAATACGTAAAACTGAACGTGCACTTAAAGTTGCTGAGGAGGAAATGATGAAGGCAAAGTTGGAGGCCAGCTCA AGAACAAAAGAGTTAATGGAGGCTCATGGTGCTTGGCTTCCTCCATGGCTTGCTGTACAGTTTGTTGGCTTTCAGTCTTTGGCACAGGAGCATTGGAATG CCCATGGAAAGCCTACCGTGGAATTAGTGATTCAAAAGGCCCAGGAACACAAGGAAAAGGCTGCAAAGTGGGCTGAACCACACCTGGAAACAGTTAAAAC TAAATGGGTCCCAACTGTGAAGGATCAGTGGGTGGAGGTAAGAACTCAGGTTGAACCACATGTGCGGTCAGCAAGTGCCAAAACTGTGGAAGTGTATGAG ACTTCAAAGACTGCAATAACTGCTCATGTTATTAAAATACAAGAGATAGTGGACCCCTACTTTCAGGAAGCTAAGAAGTTCAGTAAGCCATACATTGAGC AAGTTGCCTCAGTCACCAAACCCCATGTTGACAAAATTAAGGTGGTTGTTAGACCATATACTAAGCAAGCTGTTCGTGCTTATGGGAAGTTCCTAGAGTC GGCCACTACATATCATCATCAGGTGCAAGGAACTGTTCAAGAGACCCTGAAGAAGCATGAATTGACAAAACAGTTTGCAACTAAAGAATTGGTCTGGTTT TTGGCATCAGCTCTACTGGCCCTGCCAATAATCATCCTGTCTAGAGTTTGTTCAGCTGCTTTCAGCAAGAAGACAAAGAGAGCAAGTAGAGGAGGAGGAG GCGCCCATTCTAACCACTCTCATCGCCGGAGGGGTAAAAGGGTTCATTCTGAAAAGTGA
AA sequence Show only first row Show all	>Lus10020166 pacid=23142010 polypeptide=Lus10020166 locus=Lus10020166.g ID=Lus10020166.BGIv1.0 annot-version=v1.0 MAAAKFLAFSFFLALLLSAVWADVDGDVGKPAIQVTESSDLHSSALKFELDQAKSKIQELESQFERKAKELKEKEEKLAKKEKLIKEKADSITSLQSEIS SLQKKGKLDSAEQLNKANAQVVDLEKQLDRLKEEFEAQNTEKEALENRASKAETKLDELNSKLKDLQNISDEQKSKIRKTERALKVAEEEMMKAKLEASS RTKELMEAHGAWLPPWLAVQFVGFQSLAQEHWNAHGKPTVELVIQKAQEHKEKAAKWAEPHLETVKTKWVPTVKDQWVEVRTQVEPHVRSASAKTVEVYE TSKTAITAHVIKIQEIVDPYFQEAKKFSKPYIEQVASVTKPHVDKIKVVVRPYTKQAVRAYGKFLESATTYHHQVQGTVQETLKKHELTKQFATKELVWF LASALLALPIIILSRVCSAAFSKKTKRASRGGGGAHSNHSHRRRGKRVHSEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31340			myosin heavy chain-related (.1...		Lus10020166 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	1.7	0.7638
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	6.7	0.7693
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	10.4	0.7693
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	17.8	0.7348
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	19.2	0.7299
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	23.0	0.7272
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10021658 [exp]	28.7	0.7336
AT5G62960			unknown protein		Lus10032130 [exp]	32.3	0.7576
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	36.5	0.7175
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	47.6	0.7005

Compare expression of checked genes

Lus10020166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.