Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55510 457 / 3e-153 RBL REBELOTE, Noc2p family (.1) AT2G18220 321 / 5e-99 Noc2p family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041417 [exp] 997 / 0 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10036510 [exp] 990 / 0 AT5G57250 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026968 [exp] 534 / 0 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1) Lus10025551 [exp] 271 / 9e-80 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 237 / 3e-68 AT2G18220 760 / 0.0 Noc2p family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043400 [exp] 725 / 0 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.001G012800 [exp] 300 / 6e-91 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.003G213601 [exp] 171 / 4e-47 AT2G18220 416 / 4e-140 Noc2p family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family
Representative CDS sequence Show only first row Show all	>Lus10020167 pacid=23142078 polypeptide=Lus10020167 locus=Lus10020167.g ID=Lus10020167.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTAGGAAAGAATGCCAGGAAGTTCGCCAAGAAGAATCTTCAGTCAGTGATGAAAAGGAAGAGGAAGATAAATTCCGTATATAAGAAAAGAG CTATGAAAAAAGGGGGGCGTGGAGGTGGCAATCAAAAAGAGGACATAATGCCACCACAGACTAGTGGAAGAGACACTCAAGTAGAGGATGTGGGAGCTAT ATCATTTGATGCGATATTCAATGAGAATGAAAGTGATATGGGGGGAGATGATTCTGGAAGTGATGGATATTTATCAGAGGATGCAGGCTGTATTGACATA GATGAAGGCAAAAGGGATATTAACCGAAAAGGTGAAGACGTTATGGACAGTAGCAATGATACTGGTGTATCTGGACAGAACAGAATTGTATTCATGGAGC TTGCAAAGCAGAAGAAAAAATTGGAAAAATTGAAAGAAAAGAATCCGGGATTTGTCAAGTTCTTGGGGCGTTTTGAAAGCCGTACTGTTCCAATCGCAGA AGAAGAAAATTATTCAGGTGAAGATGAAAGTGATGATGATAACAGGCAGTCAACAGATGAAGATGGCTCACTATTAGGAGTTGGCAAGTTCTTGAGCAGT TCTGATGTTGATTCCTTGTGTCAACTTGTTAAGGAGCAACATGACATGCCTTCCCTTATACGGATTTTGAATGCATATAGAGCGGGGAGCCATTATGGGT CTAAATCTTTTGGTGTTCTGGAAGGCACAGAAGGTCTTGGCAATGTTATGATATTTGTGCTTCAGGAAGCAAATGAGGTGTTCCGGAAAATTTTGGGAGT TTCAAGTTCCACTCAAAAGAAGGAGGTCATTTTGGAATTGAAAAATACATCAAAATGGAAAACCCTGAGGCCTCTCATTAAGTTGTACTTGAGAAGTACA ATCTTTCTTCTCAACGAAGTTACTGACTCTGAGCTATTAGCTTTTATTATGAAACGGCTAAGGACGTTTGTAGCCTTCTTTGCTGCGTTTCCATCATTAC TGCAGAGGCTGATTAAGATCTCAGTTCATCTTTGGGCAACTGGTAAAGGGGATCTGTCAGTGCAATCATTCCTTGCCATACAAGATGTGGCTGTTGTGTT CAACTCGGATTTGTTTGAGACATGCTTCGTCAAGGCATACAAGACCATTATTGGCCATTGCAAATTCGTAGATCCTGCCATTTTTGAACACCTTCAGTTT CTTAAGAAGTCCTTCATCGAGCTATGTTCTCAAGATATGCAGAAATCAATGCAGATGGCAATTCTTTCAATCAGAGAACTTGCTAAGAGTTTACAGCTGG GTTTACGAACTAGGCAGAAGGGAAATGCTTCGACTTATCCCCTTCTCATTGGTTGCTTTTATACAGGATGTGGTAAAGCAGATTTGCAGCTGGCAATAAT AAATGGAGTAGCAGTCCTCTTTCCAGGGCCAAGATACTTACCTTTGAGAGTTAAAAGTGTTCAGTGGTTGAATCATCTCTCCAGTTCCTGCGGTACATTC ATCCCTATTGCATCGCTGGCACTTGATATTTTGGAATACAATATTGACAAAGAGCATCAGAACCCTGGAAAGAGTTTCGACTTGTCATCTGAAGTTAAGT TACCAAAACACTGGATGAAATCTCGAAACTTCCAGGAAGCGTGTATTTTTTCTACCCTTGAATTGCTTGCTGTGCACTTTGCTCAATGGGGGTGCCACAT ATCTTTCCCTGAGTTGGCTACTATCCCTCTGATCCATTTGAAGAAATTCCATGAAAGGACGAGCATAGAGAGTTTTCGCCGAATGGTGAAACGTTTTGTA GATCAGGTGGAGCAGAATGTGGATTTTGTGCGCAAGAAGAGGGACGAAGTTGCTTTCTCACCAAAAGACGAGGAGGCAGCTGCGTCATTTCTTCAGCTGG AGAAATCAGGTGGCAACCTTGCGTTTATTCAGTACTACAAGAGTCTCACAGGAAGGGTGGCGTCGAGGGATCTGCTCATGACTAAAAACATAAGATACAT ATTATGCAGTTCCTTGGAGGCAAAGAAGGCGAAAGGAAAGAAGCAACGACCTTCAAATGACATTATCAACGCAGCTAAAGAAATGGAACCAATGGAAGAA TAG
AA sequence Show only first row Show all	>Lus10020167 pacid=23142078 polypeptide=Lus10020167 locus=Lus10020167.g ID=Lus10020167.BGIv1.0 annot-version=v1.0 MGKLGKNARKFAKKNLQSVMKRKRKINSVYKKRAMKKGGRGGGNQKEDIMPPQTSGRDTQVEDVGAISFDAIFNENESDMGGDDSGSDGYLSEDAGCIDI DEGKRDINRKGEDVMDSSNDTGVSGQNRIVFMELAKQKKKLEKLKEKNPGFVKFLGRFESRTVPIAEEENYSGEDESDDDNRQSTDEDGSLLGVGKFLSS SDVDSLCQLVKEQHDMPSLIRILNAYRAGSHYGSKSFGVLEGTEGLGNVMIFVLQEANEVFRKILGVSSSTQKKEVILELKNTSKWKTLRPLIKLYLRST IFLLNEVTDSELLAFIMKRLRTFVAFFAAFPSLLQRLIKISVHLWATGKGDLSVQSFLAIQDVAVVFNSDLFETCFVKAYKTIIGHCKFVDPAIFEHLQF LKKSFIELCSQDMQKSMQMAILSIRELAKSLQLGLRTRQKGNASTYPLLIGCFYTGCGKADLQLAIINGVAVLFPGPRYLPLRVKSVQWLNHLSSSCGTF IPIASLALDILEYNIDKEHQNPGKSFDLSSEVKLPKHWMKSRNFQEACIFSTLELLAVHFAQWGCHISFPELATIPLIHLKKFHERTSIESFRRMVKRFV DQVEQNVDFVRKKRDEVAFSPKDEEAAASFLQLEKSGGNLAFIQYYKSLTGRVASRDLLMTKNIRYILCSSLEAKKAKGKKQRPSNDIINAAKEMEPMEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	0	1
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	2.8	0.8949
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	8.8	0.8941
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	9.2	0.8666
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	11.1	0.8874
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	13.7	0.8392
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	15.5	0.8793
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	16.4	0.8789
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	19.7	0.8491
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	20.5	0.8861
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	21.0	0.8790

Compare expression of checked genes

Lus10020167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.