Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24810 1253 / 0 ABC1 family protein (.1.2) AT4G24810 181 / 7e-49 Protein kinase superfamily protein (.1.2.3) AT5G50330 174 / 1e-46 Protein kinase superfamily protein (.1.2) AT5G64940 173 / 2e-44 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G65950 160 / 4e-41 Protein kinase superfamily protein (.1) AT3G07700 147 / 2e-36 Protein kinase superfamily protein (.1.2.3) AT4G31390 135 / 1e-32 Protein kinase superfamily protein (.1.2) AT2G40090 134 / 1e-32 ATATH9 ABC2 homolog 9 (.1) AT5G24970 125 / 4e-29 Protein kinase superfamily protein (.1.2) AT1G79600 123 / 1e-28 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026970 [exp] 1759 / 0 AT5G24810 1368 / 0.0 ABC1 family protein (.1.2) Lus10026971 [exp] 912 / 0 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10032628 [exp] 190 / 2e-51 AT4G24810 710 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10043122 [exp] 182 / 1e-48 AT4G24810 696 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 173 / 2e-44 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 157 / 1e-39 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10006363 [exp] 156 / 3e-39 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 156 / 1e-38 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10020152 [exp] 138 / 3e-33 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003400 [exp] 1263 / 0 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.006G276600 [exp] 1256 / 0 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 986 / 0 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.018G004500 [exp] 230 / 2e-68 AT5G24810 237 / 2e-71 ABC1 family protein (.1.2) Potri.018G000101 [exp] 199 / 6e-59 AT5G24810 225 / 6e-69 ABC1 family protein (.1.2) Potri.015G091000 [exp] 178 / 6e-48 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G093600 [exp] 177 / 2e-47 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 171 / 8e-44 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 171 / 1e-43 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 159 / 1e-40 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0013 [flax] [poplar] Beta-lactamase PF00144 [flax] [poplar] Beta-lactamase Beta-lactamase CL0016 [flax] [poplar] PKinase PF06176 [flax] [poplar] WaaY Lipopolysaccharide core biosynthesis protein (WaaY) CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10020168 pacid=23141993 polypeptide=Lus10020168 locus=Lus10020168.g ID=Lus10020168.BGIv1.0 annot-version=v1.0 ATGGTGACCCGAAGGAGATGGGGTAATCTTTACAGAAGGCGTATGAGAGTGTTTTCACTTGCTGTAGTGATTTACCTTGATTATAAGGCTTTACAGCAAA GAGAGAAATGGATTAGCCCTTCTAAAAGAGCTACTCTGTGGGAGAAGGCTCATGAGCGAAATGCTAGGCGTGTTCTTAATGTGATGATTGAATTGGAAGG TTTGTGGGTGAAACTTGGGCAGTATTTGTCCACTCGTGCTGATGTGCTTCCTCGTGCTTACATATCGCTACTCAGGCAGTTACAAGATGCTCTTCCTCCT CGTCCTTTGCAAGAGTTCCCTAACCGAGTACTTCCAACTGTGCAGATTCGTGCAACAATAAAAAAGGAGTTGGGGTACACCGTCGATGATCTCTTCTCTT ATTTTGATGACGTTCCTCTAGCAACTGCATCGATTGCACAAGTCCACCGTGCAACTTTACTTGATGGGCGAGAAGTTGTTGTAAAAGTTCAGCATGAGGG CATCAAGACAATCATACTAGAGGATTTAAAAAATGCCAAGGCAATTATTGACTGGATAGCATGGGCAGAGCCACAATACAATTTCAACCCCATGATTGAT GAATGGTGCAAAGAAGCTCCAAAAGAACTTGACTTTAATCGTGAAGCTGAGAACACTAGAACTGTCGCTAAAAATCTGGGATGCAAGAACAAGGATGGGA ACAACACAGATGGGAATAAAGTTGATGTTTTGATCCCAGAAGTGATCCAGGCTGCTGAAAAGGTCCTAATCCTAGAGTACATGGATGGGATTCGTTTAAA TGACCGTGAAGCCTTGGAAGCTGCTGGTGTTGACAAACAAAGGATTGTTGAAGAAATTACACGTGCCTATGCTCATCAAATATATGTCGATGGATTGTTC AATGGTGATCCCCATCCCGGAAATTTCCTGGTAAGCAAGGAAGCTCCTCATCGTCCAATTTTGCTCGACTTTGGGCTTACAAAGGAATTATCAGCTTCCC TGAAACAAGCACTGGCTAAGATGTTTCTTGCATCAGTTGAGGGTGACCATGTTGCTCTTTTGTCTGCTTTCTCGGAAATGGGTCTTAAGCTTCGGTTGGA CATGCCAGAGCAAGCAATGGAGGTGACTAATGTATTCTTCCGTACCGCAACTCCAGCTACGGATCCTGTTGAAAACATGAAAACTTTGTCTGAGCAAAGA TCAAAAAACATGAAGGTGATCCAAGAAAGGATGAAGCTCAACCAAAAGGATGTTAAAAGATTTAATCCAATTGATGCATTTCCTGGCGACATTGTCATAT TCGGCCGGGTGCTTAATCTTCTAAGAGGACTTTCTTCCACATTGAATGTTCGTATTGTATATCAGGAGATCATGAGACCATTTGCTGAATCTGTGCTCCA GGGATATATACACAAGGCACCAGCATCGAATATCCAGTGGATATATGACACACCTGTCCATTCTAATGTGGAAGCCAAGTTGAGGCGGCTCTTAGTTGAG CTTGGAAACCAAGAGAAGATACTCGGAGTCCAGGTTTGTGCTTATAAAGAAGGGAAGGTTATTATTGACACTGCTGCTGGAGTTCTCGGGAGATATGATC CTCGCCCAGTTCAACTAGATAGCCTCTTCCCAGTTTTCTCCGCAACAAAGGGTGTCACAGCTGGTTTATTGCATTGGCTCGTAGACAATGAGAAACTCAA GCTTGATGACAATGTTGTCAACATCTGGCCAGAATTCGGAACTAATGGAAAAGATCTTATCAAGGTCAATCACGTTCTTAACCATACATCCGGCTTGCAT AATGCCCTGGCCAATCTCAGTGGAGGAAATCCTTTATTAATGTGCGACTGGAAAGAATGTCTTAATCAAATTGCTCTGGCTGAACCAGAGACAGAACCTG GTCGGGAACAGTTGTATCATTATCTATCATATGGCTGGCTGTGCGGTGGGATTATCGAGAATTCATCCCAGAAGAATTTCCAGGAGATCCTGGAAGAAGC AATTGTTAAACCCCTCAATATTGACGGCGAGTTATATGTTGGAATACCTCCTGGTGTGGAATCCAGACTTGCTAGCCTCACACTAGACACAAATGACCTA AGCAAACTGGGACAGACTACCAACCGCCCCGATCTTCCCTCCACATTCCAACCAGATAGGGTTGGTACTCTATTGACTACACTTCCTGCACTGTTCAACA TGCTGATTACTCGGCGTGCAATCATCCCTGCCGCTAATGGGCATTGCTCAGCTCGTGCTCTTGCACGATACTATGCAACCCTTGTTGACGGCGGGGTCAT ACCACCTCCGCATTCTTCCTCTTCCAAGCCACCTCTCGGTAGCCACCCGCACACCCCCAAACTTGCGACGCTGAACCACCCTAAGCAGAAAGCAAAGAAA CGCAGGGAAGTGGTTGCTCCTTCAAACAAGAAACAGGATGATGATGATGACGACGACAATTGCAGCGATGATGAAAACAAAGAAGGCGACAGCAGCAGAA ACACTAACGGCCATACTTACTCAAAGCTGGCTAATGATGAGAGTACATCTCGCACCGAGTTGCGTGAAAGTGGGAGGACTCGAGTGTATACTAACCCTAG GATTCATGAAGCATTCATGGGCACCGGGGAGGAGTACGGTGGATTGGCCTTGCCCAATGGAGTATTTGGGTTAGGTTTTAGGAGGTTGAGATCCAATGGG AGCATTGTTGGGTTTGGACACAGTGGGATGGGTGGGTCAACTGGCTTTTGCTTCCCTAAGGAAAGGTTTGCAATAGCGGTGACAGTGAATAAGATGTCGT TAGGGTATGGGACTAGGAGAATCATGCAGTTGGTGTGTTCAGAATTGAATATGCCATTGCCAGAAGAGTTCTCGCTGCCGATTGGTGGTGGTGGTGAGAT TGAGTCCGGCAAAGGGGCGCCTCTAATTAACTGA
AA sequence Show only first row Show all	>Lus10020168 pacid=23141993 polypeptide=Lus10020168 locus=Lus10020168.g ID=Lus10020168.BGIv1.0 annot-version=v1.0 MVTRRRWGNLYRRRMRVFSLAVVIYLDYKALQQREKWISPSKRATLWEKAHERNARRVLNVMIELEGLWVKLGQYLSTRADVLPRAYISLLRQLQDALPP RPLQEFPNRVLPTVQIRATIKKELGYTVDDLFSYFDDVPLATASIAQVHRATLLDGREVVVKVQHEGIKTIILEDLKNAKAIIDWIAWAEPQYNFNPMID EWCKEAPKELDFNREAENTRTVAKNLGCKNKDGNNTDGNKVDVLIPEVIQAAEKVLILEYMDGIRLNDREALEAAGVDKQRIVEEITRAYAHQIYVDGLF NGDPHPGNFLVSKEAPHRPILLDFGLTKELSASLKQALAKMFLASVEGDHVALLSAFSEMGLKLRLDMPEQAMEVTNVFFRTATPATDPVENMKTLSEQR SKNMKVIQERMKLNQKDVKRFNPIDAFPGDIVIFGRVLNLLRGLSSTLNVRIVYQEIMRPFAESVLQGYIHKAPASNIQWIYDTPVHSNVEAKLRRLLVE LGNQEKILGVQVCAYKEGKVIIDTAAGVLGRYDPRPVQLDSLFPVFSATKGVTAGLLHWLVDNEKLKLDDNVVNIWPEFGTNGKDLIKVNHVLNHTSGLH NALANLSGGNPLLMCDWKECLNQIALAEPETEPGREQLYHYLSYGWLCGGIIENSSQKNFQEILEEAIVKPLNIDGELYVGIPPGVESRLASLTLDTNDL SKLGQTTNRPDLPSTFQPDRVGTLLTTLPALFNMLITRRAIIPAANGHCSARALARYYATLVDGGVIPPPHSSSSKPPLGSHPHTPKLATLNHPKQKAKK RREVVAPSNKKQDDDDDDDNCSDDENKEGDSSRNTNGHTYSKLANDESTSRTELRESGRTRVYTNPRIHEAFMGTGEEYGGLALPNGVFGLGFRRLRSNG SIVGFGHSGMGGSTGFCFPKERFAIAVTVNKMSLGYGTRRIMQLVCSELNMPLPEEFSLPIGGGGEIESGKGAPLIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	1.0	0.9189
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	1.4	0.8212
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	3.5	0.8186
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	5.3	0.8006
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	6.0	0.7847
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	6.2	0.7823
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	6.3	0.8148
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	8.5	0.7963
AT1G04200			unknown protein		Lus10039377 [exp]	9.8	0.8026
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	10.9	0.7740

Compare expression of checked genes

Lus10020168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.