Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54370 476 / 1e-168 Late embryogenesis abundant (LEA) protein-related (.1) AT4G27400 431 / 6e-151 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 378 / 6e-130 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 279 / 4e-90 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G60520 267 / 9e-87 Late embryogenesis abundant (LEA) protein-related (.1) AT3G19430 250 / 1e-77 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G24810 91 / 2e-19 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038588 [exp] 655 / 0 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 651 / 0 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10037886 [exp] 553 / 0 AT5G54370 394 / 4e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 385 / 6e-133 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 369 / 3e-126 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 343 / 7e-116 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 262 / 1e-84 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 258 / 1e-83 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 259 / 5e-83 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127900 [exp] 422 / 1e-147 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.012G145400 [exp] 365 / 1e-124 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 264 / 6e-85 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 258 / 7e-83 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G145700 [exp] 245 / 3e-76 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 238 / 5e-71 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.006G276600 [exp] 102 / 4e-23 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2) Potri.018G003400 [exp] 100 / 2e-22 AT5G24810 1250 / 0.0 ABC1 family protein (.1.2) Potri.018G003600 [exp] 99 / 3e-22 AT5G24810 956 / 0.0 ABC1 family protein (.1.2) Potri.018G000101 [exp] 49 / 1e-06 AT5G24810 225 / 6e-69 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10020169 pacid=23142026 polypeptide=Lus10020169 locus=Lus10020169.g ID=Lus10020169.BGIv1.0 annot-version=v1.0 ATGTCACTTGCAGATAACACAAGGGCCGTATCCGAAAATTTGGGATGCAAGGAGAAATATGATAATAAAAAAGATGAACATTACGTGGATGTCCTTATCC CAGAAGTGATTCAGTCAACTGAAAAGGTTTTAATCTTAGAGTATATGGATGGAATTCGTTTGAACGACAATGTAGCATTGGAAGCCGCTGGTGTTAAAAA GCAAAAGATTGTTGAGGTAACTGCAGCGACTATTCTGATGGTGGCAGCTGCTCTACAGCTAGCCGTCGTCGTTTCAGCTGCCGATCATTATTACCCGAAA GCCGAAACTGTGTGGTGCAACAACACTCTTAGCCGTTGCTCCGGCGCTTACGTCCCCTGCCCTGCCGAATGCCCCTCAACTACCTACCCTAATGCCAAAT CTAAAGTTTGTCACGTCAATTGTGATCATCCCCTTTGCAAGGCCCAATGCAAGAAGCGAAAGCCCAACTGCGACGCACCGGGGTCAGCATGCTATGACCC GCGTTTTGTTGGAGGAGATGGCGTAGTGTTCTACTTCCACGGCAAGACCAACGAGGTCTTCAGCTTGGTCTCCGACCCGAACTTCCAAATCAACGGACGT TTCATCGGCCACAAGCCTTTGGGGAGAAGCCGTGACTTTACGTGGATTCAATCCTTGGGGATTGTCTTCAACTCCCACAAATTCACCCTCGAGGCCACCA AGTCCGCAACATGGGACAGCAACGTGGAACATCTCAAGTTCGCTTACAACGGTCAGGACCTCTCGATCGCGCAGGGCTCTCTGTCCTCATGGTACTCTGG TGAGAGCAGAGACATTAAAGTCGAGAGGGTTTCGAACAAGAACAGCGTTATGGTCACGCTGAAGGACAAGGCTGAGATCCTTGTGAATGTGGTGCCAGTC ACCAAGGAAGATGACAGAGTGCACAAATATCAAGTCCCTCAGGATGACTGTTTCGTCCATTTGGAAGTTCAGTTCAGGTTCTTTGACCTGTCCCCTAAAG TTGATGGAGTTCTGGGTAGGACTTACCAGCCTGATTTCGAGAACTCTGCTGCTAAACCTGGTGTGGCTATGCCGGTTGTGGGTGGAGAAGACAAGTACAG AACAACTGACCTTCTTTCTACAGAATGCGGATCTTGCATCTTTTCAGCATCAGAAACCACTGAGGTGAAGAATGTGATGGACTTTCCTACACTGGACTGC ACCAGGGGATCTGCTGCTGGTTTTGGCATTGTTTGCAGAAAGTGA
AA sequence Show only first row Show all	>Lus10020169 pacid=23142026 polypeptide=Lus10020169 locus=Lus10020169.g ID=Lus10020169.BGIv1.0 annot-version=v1.0 MSLADNTRAVSENLGCKEKYDNKKDEHYVDVLIPEVIQSTEKVLILEYMDGIRLNDNVALEAAGVKKQKIVEVTAATILMVAAALQLAVVVSAADHYYPK AETVWCNNTLSRCSGAYVPCPAECPSTTYPNAKSKVCHVNCDHPLCKAQCKKRKPNCDAPGSACYDPRFVGGDGVVFYFHGKTNEVFSLVSDPNFQINGR FIGHKPLGRSRDFTWIQSLGIVFNSHKFTLEATKSATWDSNVEHLKFAYNGQDLSIAQGSLSSWYSGESRDIKVERVSNKNSVMVTLKDKAEILVNVVPV TKEDDRVHKYQVPQDDCFVHLEVQFRFFDLSPKVDGVLGRTYQPDFENSAAKPGVAMPVVGGEDKYRTTDLLSTECGSCIFSASETTEVKNVMDFPTLDC TRGSAAGFGIVCRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	0	1
AT3G47710	bHLH	BNQ3, PRE4, bHL...	BASIC HELIX-LOOP-HELIX PROTEIN...		Lus10024241 [exp]	2.0	0.9762
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	2.2	0.9827
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	3.2	0.9797
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	4.2	0.9781
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	4.5	0.9719
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	8.4	0.9580
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10020022 [exp]	8.5	0.9716
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	8.5	0.9659
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10022684 [exp]	8.8	0.9360
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	9.2	0.9670

Compare expression of checked genes

Lus10020169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.