Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24800 106 / 4e-27 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) AT5G28770 73 / 1e-14 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT4G02640 69 / 4e-13 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT3G54620 57 / 3e-09 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026973 [exp] 390 / 2e-137 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10006590 [exp] 74 / 7e-15 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10015913 [exp] 74 / 1e-14 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10018759 [exp] 56 / 1e-08 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024847 [exp] 56 / 1e-08 AT3G54620 171 / 2e-48 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024848 [exp] 56 / 2e-08 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G277800 [exp] 155 / 8e-46 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Potri.013G040700 [exp] 77 / 1e-15 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 76 / 2e-15 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.002G045800 [exp] 64 / 2e-11 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.005G217500 [exp] 59 / 1e-09 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12498 [flax] [poplar] bZIP_C Basic leucine-zipper C terminal CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10020170 pacid=23142087 polypeptide=Lus10020170 locus=Lus10020170.g ID=Lus10020170.BGIv1.0 annot-version=v1.0 ATGGAGGATCAGAAACCACGGGACTTGAAGCGGAGAGCATCGGACGGTGGACTCATGGTCAAACAAGGTTTTGTCAACTCCGCTTCCCAACCAGCAGCAG CAGCAGCTTACTCAGTGAGAGACGACAAATTCAGGGGCGAATTTCAGGGTTTCGCCAACGAAATAGAGGGCTTCTTCGGAGATATTTACTCCGATGATCT CTTCACCTTCAAAACTCCGGACTCCATTAATGGATTTGCAGCTTGTGGTGGGCTAGATTCACTTCTATGGTCACACAATGTCAACTCCAAGGAATACAAC AATTCGGTGCCCATTAACTCTCAGATGGTCTCAAATCGGGAGTCTGCTAGAAGATCTCGAAGAAGGAAGCAAGCTCATTTGACTGATCTAGAAATTCAGG TTGAACAACTGACAGGAGAAAGTGCATCACTGTACAAGCAGCTGTCAGATGCTACACAGCAATACCGGAACGCTGATACTAATCATAGAGTGCTGAAATC AGATGTTGAAGCCTTGAGGGCCAAGGTAAAGTTGGCAGAAGACATGGTAGCTCGTGGATCTCTGACTTGCAGCATGAATCTTCTCCTCCCAAACAACCCA CCACCGCCGATACCACCTCATCAGGTTCTGAACAGCCACATTACTCTTTCTCCCCGTGTCGCCAATGTTTCTCCGACGATCACAGTTCAAGGAGGAGGAG GAGGAGGAGGGGATGATGTCACTTATGGCGGAATCGGAAATCCTAGCAGCATCAGCAATCATGGTGTCCTAAGCGAGGCTGCTGTAAGCTGCGCGTCAAC TGATATTTGGCCTTGA
AA sequence Show only first row Show all	>Lus10020170 pacid=23142087 polypeptide=Lus10020170 locus=Lus10020170.g ID=Lus10020170.BGIv1.0 annot-version=v1.0 MEDQKPRDLKRRASDGGLMVKQGFVNSASQPAAAAAYSVRDDKFRGEFQGFANEIEGFFGDIYSDDLFTFKTPDSINGFAACGGLDSLLWSHNVNSKEYN NSVPINSQMVSNRESARRSRRRKQAHLTDLEIQVEQLTGESASLYKQLSDATQQYRNADTNHRVLKSDVEALRAKVKLAEDMVARGSLTCSMNLLLPNNP PPPIPPHQVLNSHITLSPRVANVSPTITVQGGGGGGGDDVTYGGIGNPSSISNHGVLSEAAVSCASTDIWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10020170 [exp]	0	1
					Lus10006537 [exp]	12.9	0.6740
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	24.2	0.7469
AT5G54930			AT hook motif-containing prote...		Lus10040754 [exp]	57.4	0.7120
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	57.5	0.7044
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	73.7	0.6998

Compare expression of checked genes

Lus10020170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.