Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05990 63 / 8e-13 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G29000 61 / 8e-12 Calcium-binding EF-hand family protein (.1) AT3G59440 59 / 5e-11 Calcium-binding EF-hand family protein (.1) AT3G47480 58 / 1e-10 Calcium-binding EF-hand family protein (.1) AT4G20780 58 / 2e-10 CML42 calmodulin like 42 (.1) AT5G44460 57 / 4e-10 CML43 calmodulin like 43 (.1) AT2G41100 57 / 9e-10 ATCAL4, TCH3 TOUCH 3, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, Calcium-binding EF hand family protein (.1.2.3.4) AT4G09570 55 / 6e-09 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 54 / 1e-08 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G12860 52 / 1e-08 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026974 [exp] 291 / 9e-102 AT3G29000 68 / 3e-14 Calcium-binding EF-hand family protein (.1) Lus10017174 [exp] 62 / 9e-12 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10021134 [exp] 62 / 1e-11 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10034463 [exp] 60 / 3e-11 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10003239 [exp] 59 / 1e-10 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10019090 [exp] 58 / 2e-10 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10020389 [exp] 54 / 4e-10 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10026301 [exp] 56 / 8e-10 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10035611 [exp] 56 / 1e-09 AT4G20780 242 / 3e-82 calmodulin like 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G276500 [exp] 131 / 5e-39 AT4G20780 74 / 8e-17 calmodulin like 42 (.1) Potri.017G029700 [exp] 68 / 5e-14 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G112500 [exp] 60 / 2e-11 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.007G128600 [exp] 59 / 1e-10 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.016G142000 [exp] 58 / 2e-10 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.017G084800 [exp] 57 / 4e-10 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.008G159300 [exp] 53 / 7e-09 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.002G239100 [exp] 52 / 1e-08 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.010G080900 [exp] 52 / 1e-08 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.002G077300 [exp] 50 / 8e-08 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10020171 pacid=23141957 polypeptide=Lus10020171 locus=Lus10020171.g ID=Lus10020171.BGIv1.0 annot-version=v1.0 ATGACAGGAGGAGGGATCACTGGAGTTTGCTCCAAATTGATTGCAGACATCCTATCCCGATTGCATAAGCAGAAGCAGCCAACCAACTCACCAATCACAT CACCAGTACCTCCTCCAAAGACCAACGCCGACGATCTGACGATAAGGGCATTGAAGGAGGTGTTCGGGATGCAAAACGACGGCACGATCAACATGGCCAA GGCTCGCCGCGTGGTGGAGAAGCTGGGCCTCCTCCTCAACGACGAAGAAGAAGTTACAGTTGGGGTGGAAGAGCTGGCAAAGGAGAATATTGGTAGTAGT AATACGACGTCGGAGGAGGAGGAGGAGGAGGAAGTGATGATGATGAGGGAAGCTTTCAGGATATTTGACGAGGATGGTAATGGATACATTGATGCCCAGG AGCTACAGCGAGTGCTCCTCTGCTTGGGCCTGGACAGAGGGTGCTGGGATCTCTCTGATTTCAACGCAATGCTCAAGTTGGTGGACCTCAACTCCGATGG CAAAGTTGATTTCTCCGAGTTCCAACTCATGATGATGATGTCCTCCTCCTCCTCCTCCTCCTGA
AA sequence Show only first row Show all	>Lus10020171 pacid=23141957 polypeptide=Lus10020171 locus=Lus10020171.g ID=Lus10020171.BGIv1.0 annot-version=v1.0 MTGGGITGVCSKLIADILSRLHKQKQPTNSPITSPVPPPKTNADDLTIRALKEVFGMQNDGTINMAKARRVVEKLGLLLNDEEEVTVGVEELAKENIGSS NTTSEEEEEEEVMMMREAFRIFDEDGNGYIDAQELQRVLLCLGLDRGCWDLSDFNAMLKLVDLNSDGKVDFSEFQLMMMMSSSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	2.0	0.9159
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10032117 [exp]	2.8	0.9170
AT5G42785			unknown protein		Lus10001961 [exp]	3.7	0.8911
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	4.2	0.9057
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	4.5	0.8952
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	5.7	0.8869
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	6.6	0.8551
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10001226 [exp]	6.8	0.8516
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	8.0	0.8967
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	8.4	0.8822

Compare expression of checked genes

Lus10020171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.