Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31330 270 / 6e-93 Protein of unknown function, DUF599 (.1) AT5G10580 251 / 2e-85 Protein of unknown function, DUF599 (.1.2) AT5G24790 193 / 2e-62 Protein of unknown function, DUF599 (.1) AT5G24600 107 / 8e-29 Protein of unknown function, DUF599 (.1.2) AT3G18215 97 / 1e-24 Protein of unknown function, DUF599 (.1) AT5G43180 77 / 3e-17 Protein of unknown function, DUF599 (.1) AT5G46060 57 / 5e-10 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026976 [exp] 326 / 9e-115 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 109 / 1e-29 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10015590 [exp] 100 / 4e-26 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 98 / 7e-25 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 96 / 6e-24 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 93 / 5e-23 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10025217 [exp] 72 / 2e-15 AT5G43180 182 / 2e-57 Protein of unknown function, DUF599 (.1) Lus10025134 [exp] 70 / 1e-14 AT5G43180 184 / 5e-58 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 59 / 1e-10 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278000 [exp] 291 / 4e-101 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 112 / 8e-31 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 109 / 1e-29 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.016G137800 [exp] 102 / 9e-27 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 64 / 9e-13 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 62 / 1e-11 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10020172 pacid=23141953 polypeptide=Lus10020172 locus=Lus10020172.g ID=Lus10020172.BGIv1.0 annot-version=v1.0 ATGAAGGACAACGACAAGAAGAACATCCTGGCCGTCCAAACTCTAAGGAACCTGATAATGGGGTCCACACTAATGGCCACGACGTCCATACTGCTGTCGG CCGGGTTAGCAGCCATAATAAGCAGCACGTACAGCGTGAAGAGGCCGCTCAACGACTCCGTTTTCGGGGCCCACGGGGATTTCATGGTGGCCTTGAAATA CGTCACCATCCTAACCATTTTCCTCTTCTCCTTCTTCTGCCACTCCCTTTCCATCCGGTTCGTAAACCAGGTTAACCTCTTAATCAACACTCCGCCCCAC CCGGAAGCACTCATGATCACCCCGGACTACGTCTCCGATCTCCTCGAGAAGGGGTTCGTACTCAACACGGTCGGTAACCGCCTTTTCTACGCCGCTCTGC CTTTGCTACTATGGATTTTTGGGCCGGTTCTCGTCTTCCTCTGCTCCGTCGCGATGGTCCCTATTCTGTACAACCTCGACGTCGTATTCGGAGCCGCCGC AGTTGGTGAGAAGAAGGGCGGCGGCGTCGATCATACGGGCTTGGTGTAG
AA sequence Show only first row Show all	>Lus10020172 pacid=23141953 polypeptide=Lus10020172 locus=Lus10020172.g ID=Lus10020172.BGIv1.0 annot-version=v1.0 MKDNDKKNILAVQTLRNLIMGSTLMATTSILLSAGLAAIISSTYSVKRPLNDSVFGAHGDFMVALKYVTILTIFLFSFFCHSLSIRFVNQVNLLINTPPH PEALMITPDYVSDLLEKGFVLNTVGNRLFYAALPLLLWIFGPVLVFLCSVAMVPILYNLDVVFGAAAVGEKKGGGVDHTGLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	0	1
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	1.4	0.8766
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	2.4	0.8729
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	3.0	0.8704
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	4.9	0.8701
AT4G01140			Protein of unknown function (D...		Lus10003033 [exp]	7.8	0.7819
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	10.0	0.8654
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	11.0	0.8527
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	11.8	0.8514
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	12.3	0.8480
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	13.2	0.8018

Compare expression of checked genes

Lus10020172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.