Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80290 354 / 4e-122 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT3G55830 79 / 3e-16 EPC1 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G04500 69 / 2e-12 glycosyltransferase family protein 47 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040216 [exp] 86 / 2e-18 AT3G55830 471 / 5e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10028274 [exp] 83 / 1e-17 AT3G55830 463 / 5e-165 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10031680 [exp] 67 / 2e-12 AT3G55830 273 / 3e-90 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10037920 [exp] 53 / 3e-07 AT5G04500 1032 / 0.0 glycosyltransferase family protein 47 (.1) Lus10038646 [exp] 52 / 3e-07 AT5G04500 1009 / 0.0 glycosyltransferase family protein 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G278400 [exp] 374 / 6e-130 AT1G80290 352 / 2e-121 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.008G065800 [exp] 91 / 2e-20 AT3G55830 470 / 7e-168 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G191700 [exp] 89 / 1e-19 AT3G55830 439 / 1e-155 ECTOPICALLY PARTING CELLS, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G232700 [exp] 56 / 3e-08 AT5G04500 987 / 0.0 glycosyltransferase family protein 47 (.1) Potri.008G028900 [exp] 53 / 2e-07 AT5G04500 992 / 0.0 glycosyltransferase family protein 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF09258 [flax] [poplar] Glyco_transf_64 Glycosyl transferase family 64 domain
Representative CDS sequence Show only first row Show all	>Lus10020174 pacid=23142062 polypeptide=Lus10020174 locus=Lus10020174.g ID=Lus10020174.BGIv1.0 annot-version=v1.0 ATGATCCCAGCGTTTCTTTCTCTTTCAGCTTGCTTTTTCCTATTATCGTCGTCAGCGCCACTTCATGTTTTCTCCTCGGATCCCTGCGATGCGGCGAGTC AACCGGAACGGAAAACTCTACGGCCGGATCAAATCACCGTACTGATCAACGGCTACTCGGAGCACCGAATTCCACTCCTCCAATTGATCGCCCTAACGTA CTCCGCGTCTCCGTTAGTGGCGTCGGTCGTCGTCCTCTGGGGAAACCCGACAACCTCGGCCCAAACTCTGGCCCAATTAGCCCAAAACCTAACGAGCTAC TCCTTCAGCCCAGCGACCATTTCCCTCCTCCGCCAACCTTCAAACAGCCTCAACTCCCGCTTCCTCCCACTGCGCTCCATCAACACTCACGCGGTGTTGA TAGTCGACGACGACGTGGAGGTAGACATCAAGTCCTTCGAGTTCGCATTCCGAATATGGAGATCAAACCCGCACCGTCTGATCGGACTCTTCGTCAGATC TCACGACATAGATCTTTCCGCAAAGAAATGGATTTACACGGTGCACCCAGACAGGTACTCCATCGTACTGACCAAGTTCATGATTCTGAACCGTCGGTAT CTGTTCGAGTACAGCTGCAACGGCGGCGAAGTGATGCGGAAAATGAGGAAGATCGTCGACGAAATGCGGAATTGCGAGGATATACTGATGAACGTAGTGG TAGCTGACGAGACGAACGCAGCTCCGATGCTGGTGGGGGCACAGAAGGTGCGAGACTGGGGAGATGCTCGTAACGACGCTGGAGCTGCTGACGCGGGGAA GTCTGGGCTTGAAGGGACGGAAGAAGGGAGTATGGTGAAGAAAGTGGGATTGAGTAGCAGGAGGAGTGAGCATAGGAAGAGGAGAGGGGAGTGTATAGGA AAGTTCCATAACGTTCTAGGAAGAATGCCGTTGAGGTACGGGTATGGGAAAGTTGTTAATTCAGTTGGGGAACAAGGACTGTGTATGAAAGGTGGCAAGT TAGTCTTTTGTGATCAGCAGTAG
AA sequence Show only first row Show all	>Lus10020174 pacid=23142062 polypeptide=Lus10020174 locus=Lus10020174.g ID=Lus10020174.BGIv1.0 annot-version=v1.0 MIPAFLSLSACFFLLSSSAPLHVFSSDPCDAASQPERKTLRPDQITVLINGYSEHRIPLLQLIALTYSASPLVASVVVLWGNPTTSAQTLAQLAQNLTSY SFSPATISLLRQPSNSLNSRFLPLRSINTHAVLIVDDDVEVDIKSFEFAFRIWRSNPHRLIGLFVRSHDIDLSAKKWIYTVHPDRYSIVLTKFMILNRRY LFEYSCNGGEVMRKMRKIVDEMRNCEDILMNVVVADETNAAPMLVGAQKVRDWGDARNDAGAADAGKSGLEGTEEGSMVKKVGLSSRRSEHRKRRGECIG KFHNVLGRMPLRYGYGKVVNSVGEQGLCMKGGKLVFCDQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80290			Nucleotide-diphospho-sugar tra...		Lus10020174 [exp]	0	1
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	5.6	0.9110
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	12.5	0.8905
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	12.6	0.8986
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	18.5	0.8916
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	21.7	0.8883
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	22.7	0.8552
AT1G01800			NAD(P)-binding Rossmann-fold s...		Lus10006895 [exp]	24.7	0.8471
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	29.3	0.8870
AT3G11810			unknown protein		Lus10037134 [exp]	30.2	0.8778
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10011984 [exp]	31.7	0.8461

Compare expression of checked genes

Lus10020174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.