Plant FIBer expression Database

Lus10020175 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10620 209 / 2e-69 methyltransferases (.1)
AT5G10605 39 / 0.0001 methyltransferases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026980
[exp]
285 / 1e-99 AT5G10620 225 / 5e-76 methyltransferases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G278500
[exp]
226 / 4e-76 AT5G10620 283 / 2e-98 methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Representative CDS sequence
>Lus10020175 pacid=23141965 polypeptide=Lus10020175 locus=Lus10020175.g ID=Lus10020175.BGIv1.0 annot-version=v1.0
ATGCAAATACGGCGACCAATCCGTGGTAAAAGGGCTTTACCGGTGAGAATCGTCACTGTGGGGAAGAAGAGACCTGCTGGAGTTGAGTTGTTTGTAGACG
AGTACATTGGAAAGCTCAAACGCTATTGCTCTGTTGCTGACGTTCAAATACGCTCCAATCCTAGGAATGCTCGCGAGACTAGGGCTCAGGTTGATGACGA
AGACATGGCGGTGATGAACCTTATCACCTCTGATGATTGGGTTGTGATGTTGGATGAGCGAGGAAAGGACCTTGATTCCGCGGAGATGGCTGAATTGATT
GGAGATTCGGGAAATACAGGAGCTTCTAGGCTGACGTTCTGTATTGGAGGACCATATGGTCATGGAAAACAAATAAGGAAACGGCCTGATGTATCCATCC
GACTGTCCTCTATGGTTTTGAAGCATCAGATTGTACTGGTTGTGCTCGTGCAGCAACTTTACAGGTTAGACTCTGTTCAGCTTTGTGCTATCTGTTACGA
GTCTGGTTTCTACAGCTGGTCATGGACCATTTTGAAGGGACAAAACTATCATCATCAAACCAGTTGA
AA sequence
>Lus10020175 pacid=23141965 polypeptide=Lus10020175 locus=Lus10020175.g ID=Lus10020175.BGIv1.0 annot-version=v1.0
MQIRRPIRGKRALPVRIVTVGKKRPAGVELFVDEYIGKLKRYCSVADVQIRSNPRNARETRAQVDDEDMAVMNLITSDDWVVMLDERGKDLDSAEMAELI
GDSGNTGASRLTFCIGGPYGHGKQIRKRPDVSIRLSSMVLKHQIVLVVLVQQLYRLDSVQLCAICYESGFYSWSWTILKGQNYHHQTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10620 methyltransferases (.1) Lus10020175
[exp]
0 1
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Lus10015701
[exp]
1.4 0.9260
AT5G27560 Domain of unknown function (DU... Lus10004486
[exp]
4.6 0.9042
AT1G30520 AAE14 acyl-activating enzyme 14 (.1) Lus10036027
[exp]
6.7 0.9179
Lus10006129
[exp]
7.4 0.8943
AT2G04270 RNEE/G RNAse E/G-like (.1.2.3.4.5) Lus10036417
[exp]
8.9 0.9107
AT5G44600 S-adenosyl-L-methionine-depend... Lus10001217
[exp]
8.9 0.9209
AT5G45680 ATFKBP13 FK506 BINDING PROTEIN 13, FK50... Lus10024735
[exp]
11.2 0.8770
AT5G40160 EMB139, EMB506 embryo defective 506, EMBRYO D... Lus10032165
[exp]
11.7 0.9028
AT5G23690 Polynucleotide adenylyltransfe... Lus10036013
[exp]
15.0 0.8872
AT2G30695 unknown protein Lus10004790
[exp]
18.4 0.9115

Lus10020175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.