Plant FIBer expression Database

Lus10020176 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026981
[exp]
160 / 1e-49 AT5G35320 40 / 5e-04 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132600
[exp]
42 / 0.0002 AT5G35320 77 / 2e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10020176 pacid=23142076 polypeptide=Lus10020176 locus=Lus10020176.g ID=Lus10020176.BGIv1.0 annot-version=v1.0
ATGAAGCGCAAGGAGTTCCAAGAAGTAGACGACGATTTCTCTTCGCCTTCCCTCTACTCTCCTTCCACCAAGTCGAGAAGACTGGATTCAGAGTTCCTCC
GCTCTTCGGAAGCGGCCGCTATGGTTGATGTCCAAGAGGCGACGATGGGCGAAGAATTGGAACCCCAAAACGTTGATGGAGGAGGTTTCCGTTGGAACAA
TTGTCCAGCTGGTGATGAAATTCCAGTGGTTGATAATCCACATGAGAAAGCCATTGTGCTGTATCAGCCGCTGCCACAGTCTCTGAGTTCCCCCCAGCTT
TCCATTGTGCTAGATTCCAACTTGATTCCTGGGCTAAAAGGCAAGTATTATTATATATACTGGCCCGGAAGTTCGATGGAAGCAAAACTAGCTGAGGGGA
AACTGGCAGTAGACAAAAGCATCAGAGGATCCAATGACAATTTGGCAGTGGTTCCTTGGGTTGCTTCTCAACCACCAAAATTCTCAGCATCATCAAGACA
AGTCGCAGGTTCTTCAGAAGGGATGGAAGAAGGAGAAGAAATTGAGATGATGGACACAGATGAATCAGACTACAATAGTAGGTCATTGAAAGATTTCGAA
GCTGGTGGGATGGCATCGGAGGGAGAAGTGCAACAATGGCCGCAACCACAGCTGCCGCAGCAGTGCTTTGTGCCAGGAGTGATGCAAAATCCATCCACCC
CGGTATCTTGGTGA
AA sequence
>Lus10020176 pacid=23142076 polypeptide=Lus10020176 locus=Lus10020176.g ID=Lus10020176.BGIv1.0 annot-version=v1.0
MKRKEFQEVDDDFSSPSLYSPSTKSRRLDSEFLRSSEAAAMVDVQEATMGEELEPQNVDGGGFRWNNCPAGDEIPVVDNPHEKAIVLYQPLPQSLSSPQL
SIVLDSNLIPGLKGKYYYIYWPGSSMEAKLAEGKLAVDKSIRGSNDNLAVVPWVASQPPKFSASSRQVAGSSEGMEEGEEIEMMDTDESDYNSRSLKDFE
AGGMASEGEVQQWPQPQLPQQCFVPGVMQNPSTPVSW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35320 unknown protein Lus10020176
[exp]
0 1
AT2G46240 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASS... Lus10012648
[exp]
4.8 0.9123
AT2G46240 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASS... Lus10010133
[exp]
8.1 0.9048
AT2G28910 CXIP4 CAX interacting protein 4 (.1) Lus10016543
[exp]
9.2 0.8369
AT5G35320 unknown protein Lus10026981
[exp]
10.8 0.8781
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Lus10027518
[exp]
11.4 0.9018
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Lus10027517
[exp]
13.3 0.8988
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10035781
[exp]
14.1 0.8847
AT3G24500 MBF1C, ATMBF1C multiprotein bridging factor 1... Lus10034592
[exp]
14.5 0.8978
AT2G20560 DNAJ heat shock family protein... Lus10015402
[exp]
15.9 0.8883
AT3G10020 unknown protein Lus10003372
[exp]
17.1 0.8971

Lus10020176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.