Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71820 1164 / 0 SEC6 SEC6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026982 [exp] 1318 / 0 AT1G71820 1331 / 0.0 SEC6 (.1.2) Lus10041100 [exp] 1168 / 0 AT1G71820 1221 / 0.0 SEC6 (.1.2) Lus10036425 [exp] 127 / 7e-34 AT1G71820 123 / 5e-33 SEC6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117400 [exp] 1187 / 0 AT1G71820 1345 / 0.0 SEC6 (.1.2) Potri.019G088100 [exp] 1182 / 0 AT1G71820 1346 / 0.0 SEC6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06046 [flax] [poplar] Sec6 Exocyst complex component Sec6
Representative CDS sequence Show only first row Show all	>Lus10020177 pacid=23141952 polypeptide=Lus10020177 locus=Lus10020177.g ID=Lus10020177.BGIv1.0 annot-version=v1.0 ATGGGCGAGGATCTCGGAATCGAAGCCAAGGAGGCTGCTGTCCGCGAGGTTGCTAAGTTGCTACCGCTTCCAGAGCTATTGCTCTCTATTGCCTCCATCA AAGCTGATTATATTTCGCGGCAGCAGGCAAATGATGCTCAGCTCAGTACAATGGTTGCAGAGCAGGTTGAACAAGCACAATCTGGGCTGGCCTCACTTTC CTCATCACAGATGACCATAAACCAGCTTCGTGAGAACTTTATTGGCATTGAGAGGCTTTGCCAAGAATGTCAAACCTTAATTGACAACCACGATCAGATA AAGCTCCTTAGCAATGCAAGGAATAACCTAAACATGACATTGAAGGATGTTGAGGGTATGATGTCAATATCTGTTGAAGCAACTGGGGCTCGAGATTCAT TGAGTGATGATAGAGAACTTGTCAATACGTATGAGAGGTTAACAGCTCTTGACGGGAAGCGACGGTTTGCATTAGCTGCCGTGGAATCTCATACGGAAGA GGTTGGAAAATTAAGATTATTTTGGACAGAGGTTGAATGGCTGATTGTTGTTTCTACGTTCAGGGAATACTTTGAAGATGTTGATCAGAGTTGGGAGACC TTTGAAAATACATTATGGGGCCATGTAGCCAATTTCTATAAGCTTGCAAAAGAAAGGGTTGTTGAAATGCAAGAAATCCTAGATCAACAAGTTGCAGAGG AGGCAGCCGAGGCTGTAGGGGCTGATGCAGTGACTACAATTGCTAATCCCCGTCGATCTGCAAAGAAATCGACTGGTGCAGCAGCTTCTGCAAAGAACAC TGCACAACAGAAATTAAATGTTCCAGGAAAAGGGTTTAAGGACAAGTGCTATGAGGCCATAACAAAAGCAGTCGAGGCTCGGTTCAACACGCTGCTGACG GAGCTAGTGTTTCAGGATCTTAAAGCTGCTTTAGAAGAAGCTCGATTGATAGGAGAAGAGCTTGGAGACATTTATGACTTCGTAGCCCCTTGCTTTCCTC CAAGATATGAAATATTCCAACTCATGGTTAATCTTTACACTGAAAGATTTATTCAGATGCTTAGATTGCTCAGTGATAGAGCCGGTGAACTCACAAATAT AGAGATTTTAAAGGTTACAGGTTGGGTGGTTGAGTACCAAGACAATCTTATTGGACTTGGTGTTGATGAAACCTTGGCACAAGTCTGTTCAGAAAGTGGT GCCATGGATCCCCTCATGAACTCTTATGTTGAGAGAATGCAAGCGACAACAAAGAAATGGTACCTAAATATACTTGAAGCTGATAAAGTACAGCCTCCAA AGAAAACAGAGGATGGAAAGTTGTACACTCCAGCTGCTGTGGATCTGTTCAGGATTCTTGGGGAGCAAGTGCAGATTGTTAGGGACAATAGCACTGATGT CATGCTTTATAGAATTTCCTTGGCCATTATCCAGGTGATGATGGATTTTCAAGCAGCTGAAAAGAAAAGGCTCCAAGAACCTGCTTCTGAAATCGGTTTG GAACCTCTATGTGCAATCATCAATAACAATCTAAGATGCTATGACCTTGCCATGGAGCTTAGTACAAGCATAATTGAAGCACTTCCGCAGAATTATGCTG AGCAGGAAGCAGTGCATCAAACTGTTAAGGTTATTTTTGAAGATCCAGGAGTCGAAGAATTGCTTGTCAAGCTTTATCAGAAAGACTGGGCTGAAGGGCA GGTCACAGAATACCTCGTTGCAACATTTGGTGATTATTTCACTGATGTGAAAATGTACATTGAGGAAAGATCGTTTAGGAGATTTGTAGAAGCTTGCGTG GAGGAGACTGTTGTAGTTTATGTGGATCATCTGATGACACAGAAAAACTACATAAAAGAAGAAACCATAGAAAGGATGAGGCTTGATGAAGAGGTGATCA TGGACTTCTTCCGCGAGTATGTCAGCGTCTCTAAAGTGGAAAACAGAGTGAGGATAATGAGCGACTTGCGAGAGCTGGCTTCAGCAGAAAGTTTGGACAC ATTTACACTCGTGTACACTAATATTCTGGAACATCAACCTGACTGCCCGCCTGACGTAGTGGACAAGATTGTTGCGTTGCGAGAGGGTATACCTAGGAAG GATGCGAAAGAGGTGGTACAAGAATGCAAAGAGATATACGAGAATTCGCTGGTGGGTGGTATTCCTTCGAAGACAGGGTTCGTGTTCCCAAGAGTGAAGT CATTAGCTGCTTCCAAAGGATACATCTGGCGAAAGCTGACGTAA
AA sequence Show only first row Show all	>Lus10020177 pacid=23141952 polypeptide=Lus10020177 locus=Lus10020177.g ID=Lus10020177.BGIv1.0 annot-version=v1.0 MGEDLGIEAKEAAVREVAKLLPLPELLLSIASIKADYISRQQANDAQLSTMVAEQVEQAQSGLASLSSSQMTINQLRENFIGIERLCQECQTLIDNHDQI KLLSNARNNLNMTLKDVEGMMSISVEATGARDSLSDDRELVNTYERLTALDGKRRFALAAVESHTEEVGKLRLFWTEVEWLIVVSTFREYFEDVDQSWET FENTLWGHVANFYKLAKERVVEMQEILDQQVAEEAAEAVGADAVTTIANPRRSAKKSTGAAASAKNTAQQKLNVPGKGFKDKCYEAITKAVEARFNTLLT ELVFQDLKAALEEARLIGEELGDIYDFVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRAGELTNIEILKVTGWVVEYQDNLIGLGVDETLAQVCSESG AMDPLMNSYVERMQATTKKWYLNILEADKVQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMMDFQAAEKKRLQEPASEIGL EPLCAIINNNLRCYDLAMELSTSIIEALPQNYAEQEAVHQTVKVIFEDPGVEELLVKLYQKDWAEGQVTEYLVATFGDYFTDVKMYIEERSFRRFVEACV EETVVVYVDHLMTQKNYIKEETIERMRLDEEVIMDFFREYVSVSKVENRVRIMSDLRELASAESLDTFTLVYTNILEHQPDCPPDVVDKIVALREGIPRK DAKEVVQECKEIYENSLVGGIPSKTGFVFPRVKSLAASKGYIWRKLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	0	1
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	2.8	0.8706
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	4.8	0.8810
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	5.3	0.8809
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	7.0	0.8463
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	7.3	0.8325
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	8.9	0.8333
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	12.6	0.8448
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	15.6	0.8794
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	18.5	0.8439
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	25.5	0.8211

Compare expression of checked genes

Lus10020177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.