Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16130 592 / 0 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 496 / 1e-160 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026983 [exp] 1227 / 0 AT4G16130 1013 / 0.0 arabinose kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145700 [exp] 700 / 0 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 625 / 0 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.018G138204 [exp] 430 / 2e-138 AT4G16130 1003 / 0.0 arabinose kinase (.1) Potri.018G138202 [exp] 188 / 7e-55 AT4G16130 179 / 2e-52 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature
Representative CDS sequence Show only first row Show all	>Lus10020178 pacid=23142034 polypeptide=Lus10020178 locus=Lus10020178.g ID=Lus10020178.BGIv1.0 annot-version=v1.0 ATGCGCATAGAGGAAAGTGAAGGAGGTCCGGCCTCGAGCAAGCACCTCGTCTTTGCTTACTATGTCACCGGCCATGGGTTCGGCCATGCCACTCGTGTCG TCGAGGTAGTAAGGAATCTGATTCTGGCTGGGCATGACGTGCACGTGGTTACCGGTGCCCCGGATTTTGTATTCACTTCAGAAATACAGTCTCCCCGTCT ATTCATTCGCAAGGTACTACTGGACTGTGGTGCAGTTCAAGCGGATGCATTGACAGTTGACCGGCTTGCGTCCTTGGAGAAGTATTCAGAGACGGCAGTC AAACCCCGCGAATCTATCTTGGCAACGGAGATAGAGTGGCTTAATACCATCAAGGCAGACCTAGTGGTTTCAGATGTTGTTCCAGTTGCATGCCGTGCAG CTGCTGATGCTGGTATTCGATCTGTTTGTGTCACCAACTTTAGTTGGGATTTCATATATGCAGAGTATGTCATGGCAGCTGGAAATCATCACCGATCAAT AGTTTGGCAGATTGCAGAGGACTACTCTCATTGCGAGTTCCTAATTCGCCTGCCCGGATATTGTCCTATGCCAGCATTCCGGGATGTTATTGATGTACCC CTTGTTGTCAGGAGGTTGCACAAATCCCGCAGAGAGATAAGAAAGGAACTTGGCATTAAAGAAGAAGTGAAGCTTGTTATCCTCAACTTTGGTGGGCAGC CGTCTGGCTGGAAGTTGAAGGAGGAATTCTTGCCCCCCGGTTGGCTGTGTCTGGTGGCAGCTCATATCTTACAAGAGACAGCTACTGGGAAGGACTATGC CTCAGATAAGTTAAGTGGTGCAAGAAGGTTACGTGATGCAATAGTTCTTGGATATCAACTGCAAAGGGTCCCTGGGAAAGATATTTTCGTCCCAGAATGG TATGCAAATGCTGCATCTGAACTTAGCAAGTCTACCGGGTCACCAACTGTTCAAGCATCTCAAGGAGGACCCCTATTGAGCTCATACATAGAAGAGTTTG AAATTCTTGACGGTGACATTCAAGGCTTGCCAGATACAATGAGTTTCTTGAAGAGCGTGGCAGAGCTAGATGAGATAAATGAGTATGAAAAGAATTCCGA GAAGCGTCAAATGCGGGAGCGTAAAGCTGCTGCAGGACTTTTCAATTGGGAGGAAGATATCTATGTGGCAAGAGCCCCTGGGAGGTTGGATGTGATGGGG GGCATAGCTGACTATTCAGGAAGCCTTGTCTTGCAGATGCCTACAAGAGAAGCTTGTCACGTTGCTGTACAAAGGAACTACCCAAATAAGCATAAGCTCT GGAAACATGCCCAGGCTAGACAAAATGCCAAGGGCCAAGAACCAACTCCTGTTCTCCAGATTGTGTCTTATGGCTCTGAATTAAGTAATCGTGGTCCAAC CTTTGACATGGATTTATCTGACTTCATCGAAGATGGACAGACGAGGCCATATGAGAAGGGAATGCCATATGAGAAGGCAAAGAAATTTTTTGCGCAGGAT CCCTCCCAAAAGTGGGCAGCTTATGTGGCAGGAACGATTCTGGTTTTGATGAAAGAACTTGGTGTGCGCTTTGAAGATAGCATCAGCATGCTGGTTTCGT CTGCTGTCCCTGAAGGCAAAGGTGTGTCTTCTTCTGCTTCCGTGGAGGTTGCAAGCATGTCTGCTATTGCTGCTGCCCATGGATTGAGCATCAGTCCTAG AGATATTGCTTTGCTCTGCCAAAAGGTGGAGAATCACATTGTTGGAGCCCCTTGCGGTGTAATGGATCAGATGACCTCAGCATGTGGAGAAGCCAACAAG CTTTTGGCGATGGTGTGTCAGCCTGCTGAGGTAATTGGGCTTGTTGAAATTCCTGGCCATATTCGCTTCTGGGGCATTGACTCTGGTATCCGTCACAGGT ATCCTGTCTTACTCTTGACCACCATAAACCTTAATATATCTTCTTACTACAGGATTCTCCTGGAAATATTTCCCTTATCCTATGGACCACCTGTGGCTTT CTTAATCCTATGGACTAAAACATTCCATTTCTGTCGCGAATTTGATCCTGATAAACTGCTACTTGATTTTGGCAGTGTTGGTGGTGCGGACTACGGATCA GTAAGAATTGGTGCTTTCATGGGTCGGAAGATCATAAAATCTATAGCATCTGATGTGTTGTCTAAATCACTTGACTATAGTAATGGGTTCAACCAAGATG AATTGGAAGATGATGGGGTAGCGTTATTTGAAGCTGAATCATCACTGGATTACTTATGCAACTTGACACCACACAGATATGAAGCCCTGTATGCGAAGTT GCTTCCTGAAACACTTGGGGGTCAGGAATTTGTGGACAAGTACATTGATCACAGTGATGCTGTAACAGTGATTGATAACAACCGAACGTATGTAGTGAGT GCACCGGCTAAACATCCTATATATGAGAATTTCCGAGTGAAGAGCTTCAAAGCGTTGCTAACTTCTGCAAATTCGGATGAACAACTCATTGCTCTAGGAG AACTACTATATCAGTGTCACTACAGCTACAGTGCGTGTGGTCTAGGGACAGATGGAACAGACAGGCTTGTACGGATGGTGCAGGAAATGCAACACAAATC AAAGTCCAAATCTGAAGGTGGGACCTTATATGGAGCCAAAATCACTGGGGGAGGCTCCGGCGGTACTGTCTGTGTAATCGGCAGGAATTCTTTACTCAGC AGCCAACAGATTCTCGAGGTTCAGCAGAAGTACAAAGTAGCAACTGGGTATTTGCCATTTATTTTTGAGGGGTCTTCTCCCGGTGCTGGGAAATTCGGGC ACTTGAGGATTCGACGACGGTGGTAG
AA sequence Show only first row Show all	>Lus10020178 pacid=23142034 polypeptide=Lus10020178 locus=Lus10020178.g ID=Lus10020178.BGIv1.0 annot-version=v1.0 MRIEESEGGPASSKHLVFAYYVTGHGFGHATRVVEVVRNLILAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV KPRESILATEIEWLNTIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGNHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVP LVVRRLHKSRREIRKELGIKEEVKLVILNFGGQPSGWKLKEEFLPPGWLCLVAAHILQETATGKDYASDKLSGARRLRDAIVLGYQLQRVPGKDIFVPEW YANAASELSKSTGSPTVQASQGGPLLSSYIEEFEILDGDIQGLPDTMSFLKSVAELDEINEYEKNSEKRQMRERKAAAGLFNWEEDIYVARAPGRLDVMG GIADYSGSLVLQMPTREACHVAVQRNYPNKHKLWKHAQARQNAKGQEPTPVLQIVSYGSELSNRGPTFDMDLSDFIEDGQTRPYEKGMPYEKAKKFFAQD PSQKWAAYVAGTILVLMKELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLSISPRDIALLCQKVENHIVGAPCGVMDQMTSACGEANK LLAMVCQPAEVIGLVEIPGHIRFWGIDSGIRHRYPVLLLTTINLNISSYYRILLEIFPLSYGPPVAFLILWTKTFHFCREFDPDKLLLDFGSVGGADYGS VRIGAFMGRKIIKSIASDVLSKSLDYSNGFNQDELEDDGVALFEAESSLDYLCNLTPHRYEALYAKLLPETLGGQEFVDKYIDHSDAVTVIDNNRTYVVS APAKHPIYENFRVKSFKALLTSANSDEQLIALGELLYQCHYSYSACGLGTDGTDRLVRMVQEMQHKSKSKSEGGTLYGAKITGGGSGGTVCVIGRNSLLS SQQILEVQQKYKVATGYLPFIFEGSSPGAGKFGHLRIRRRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	0	1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	1.0	0.9741
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	2.0	0.9697
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	2.4	0.9697
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	3.5	0.9474
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	3.5	0.9351
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	3.9	0.9365
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	5.3	0.9339
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	6.3	0.9280
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	7.9	0.9112
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010884 [exp]	8.5	0.8715

Compare expression of checked genes

Lus10020178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.