Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31290 342 / 3e-120 ChaC-like family protein (.1) AT5G26220 331 / 4e-116 ChaC-like family protein (.1) AT1G44790 189 / 1e-60 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026985 [exp] 489 / 5e-178 AT4G31290 332 / 5e-116 ChaC-like family protein (.1) Lus10003737 [exp] 189 / 5e-60 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10028029 [exp] 176 / 1e-54 AT1G44790 257 / 4e-87 ChaC-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002900 [exp] 355 / 1e-125 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.006G279000 [exp] 344 / 2e-121 AT4G31290 327 / 5e-115 ChaC-like family protein (.1) Potri.005G176300 [exp] 201 / 3e-65 AT1G44790 289 / 9e-101 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [flax] [poplar] AIG2 PF04752 [flax] [poplar] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Lus10020181 pacid=23142064 polypeptide=Lus10020181 locus=Lus10020181.g ID=Lus10020181.BGIv1.0 annot-version=v1.0 ATGGTGTTCTGGATCTTTGGCTATGGTTCATTGGTGTGGAACCCTGGTTTTGAGTACGATGAGAAGATCATAGGCTTCATCAAAGATTACAGGCGTGTAT TTGACCTCGCGTGCATTGACCATAGAGGTACACCCGAACATCCTGCCAGAACGTGCACATTGGAGAATGTTGAAGGAGCCATTTGCTGGGGTGCTGTTTA TTGCGTTCGGGGTGGTCCGGAAAAAGAGAGGTTGGCAATGGAGTACCTGGAGCGAAGAGAATGCGAATATGATATGAAGACTCTTGTGAACTTCTACAGG GAAGATGATCCCTCTCAACCTGCAATAACGGATGTTATAGTTTTTACCTCTACAGCAGACAAAATATCAAACAAGTACTACCTTGGGCCGGCTCCTTTGG AGGAAATGGCTTTGCAAATCGCAACCGCATTTGGTCCATGTGGGAATAATAGAGACTACCTCTTTCTGCTAGAGAAGGCCATGTTCGATATAGGACATGA AGAGGAAATGGTGATAGAGTTGGCAAATGAAGTGAGAAAGGTTCTTGGAAAAGGGATTTCCCAGGACAGAAAGACAGTGGTAAAGCCATCTAGAAAGGCA ACCCAAGTAGAAGAGAATCGGAAGCTACAGAAGGCAACTTCAGGGAAAGATGTCGTCAACAAGTCTTCTATAGGCTCGCTTGTCCAGCAACCACTTCACG ATTCTGGTGTTGTCTGTGGCAGTTTAGCTTGA
AA sequence Show only first row Show all	>Lus10020181 pacid=23142064 polypeptide=Lus10020181 locus=Lus10020181.g ID=Lus10020181.BGIv1.0 annot-version=v1.0 MVFWIFGYGSLVWNPGFEYDEKIIGFIKDYRRVFDLACIDHRGTPEHPARTCTLENVEGAICWGAVYCVRGGPEKERLAMEYLERRECEYDMKTLVNFYR EDDPSQPAITDVIVFTSTADKISNKYYLGPAPLEEMALQIATAFGPCGNNRDYLFLLEKAMFDIGHEEEMVIELANEVRKVLGKGISQDRKTVVKPSRKA TQVEENRKLQKATSGKDVVNKSSIGSLVQQPLHDSGVVCGSLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31290			ChaC-like family protein (.1)		Lus10020181 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	4.5	0.9805
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	5.7	0.9783
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004858 [exp]	9.2	0.9630
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	9.8	0.9753
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	10.2	0.9761
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	13.3	0.9687
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	13.7	0.9715
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	14.1	0.9711
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	14.1	0.9722
					Lus10022008 [exp]	16.1	0.9646

Compare expression of checked genes

Lus10020181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.