Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31270 135 / 3e-36 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G33550 66 / 7e-12 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 44 / 0.0002 Trihelix Homeodomain-like superfamily protein (.1) AT1G31310 42 / 0.0006 Trihelix hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026986 [exp] 577 / 0 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10041120 [exp] 117 / 2e-29 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10027398 [exp] 44 / 0.0003 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10031672 [exp] 43 / 0.0005 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002801 [exp] 133 / 2e-34 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.006G279100 [exp] 132 / 5e-34 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.015G105800 [exp] 66 / 1e-11 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 63 / 1e-10 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 61 / 4e-10 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.012G117500 [exp] 47 / 2e-05 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.012G132300 [exp] 47 / 4e-05 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020182 pacid=23141988 polypeptide=Lus10020182 locus=Lus10020182.g ID=Lus10020182.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCGGAACCAATTAGCGACAGGGAGAGTTCCTTAGAGCCCAAACGGAGAGGCAAGAAGCCGGAGCCGGAATCGAAAGGTGCTGATGTGGTGG AGGAGGAGGAAGATGAGGTTCCGCCGGCTGATCGGACGACCACCCGAATGACGCGCTCTAGGGCGACTCCTGAATGGACGACCAAGGAATCTTTAATTCT GGTGAACGTGATCGTTGCAATTGATGGAGACTGGCTGAGAGTTTTGTCATCCCACCAAAAATGGAAATCCGTAGCAGATAACTGCAACTTGTTGGACGTT CGCCGGAATTTGTATCAGTGCCGTGAGAAGTGGAGCTCGCTGCTCTCGGAGTACCATCGCATCAAACAGTGGAATTCTAAGGCAGGTGATCAGGGGCGTG ATCCGCCTTACTGGATTTTGGACCGTGAGAAGAGAAAACTCTTGGAATTGCCTCCAAGTTTCGATGATGAAGTGTTCAAAGCTATTGATACATACTTTAG CATAAAGCGGGAGGAGCTAGACAGCGATACAGAGACCGATCCTGAAGCTGATGCTGAGTTGCTCGAAGTCATCGCAAAGCTAGTTGGTCTTGGTCATATT GAGCCATTGTTTCCAGCGTCCAAGTCCAAGCGAAGAAAACGTTGTAGAGCTGTTCTGGAAATAGAAGGAGGATTGCCAGAAGGGTTATCTCGGCCATGTT CGCCAGAGGAAAATCCTCCGATAAATGACCTGGACGAGAACCCAGAGGAAAGTCGTGTGGAAGAAACGCATCCAGAAGAGGAACATACTCATGAAACATA TGAACCCGAGGAGGAGGAACATACTGATGAAACTTGTGAACCTGAGAACGAACAAAAACAAACAAGTGACAAGCACGTGACCATAAAAGATGAGGAAGTT TATGAAAGTCATGTTGAAGAAGGCATCCCGCGGGAGATCCCTAAAGGCGACAAGAACGGAGCAGCTAAAGAAGGAATCAGCGGGGAGCAGAAAGCTCAGA GCTACGAGAGTGAGACAAGCATGCCGTCGGAAGGGGAAAAGACTCTTAGCCAGGGGGTAGCGAGGCCGTACAAAAGAGGCCGGAAGCCGAAAGCACTAGT GGAAGAAGAGAAGATGGTGGAGGAAGTATTGGAGAAGACACAATTGATGCTGTCTGTAGCTACAGGGAGTTATCCTCGCGAGACTGAAACAAGAGGTGAT CATCTGAAGGGTGGAGAGGGATCTTCTGAAAGGGAGTTTGTACGATATGAAGCAGACAAACTTATGGAATGCCTCGGTAGGATTGTAAATATACTTGACA GGCATCCTTATCTGGTGGAAAAATACAGCTAA
AA sequence Show only first row Show all	>Lus10020182 pacid=23141988 polypeptide=Lus10020182 locus=Lus10020182.g ID=Lus10020182.BGIv1.0 annot-version=v1.0 MEEAEPISDRESSLEPKRRGKKPEPESKGADVVEEEEDEVPPADRTTTRMTRSRATPEWTTKESLILVNVIVAIDGDWLRVLSSHQKWKSVADNCNLLDV RRNLYQCREKWSSLLSEYHRIKQWNSKAGDQGRDPPYWILDREKRKLLELPPSFDDEVFKAIDTYFSIKREELDSDTETDPEADAELLEVIAKLVGLGHI EPLFPASKSKRRKRCRAVLEIEGGLPEGLSRPCSPEENPPINDLDENPEESRVEETHPEEEHTHETYEPEEEEHTDETCEPENEQKQTSDKHVTIKDEEV YESHVEEGIPREIPKGDKNGAAKEGISGEQKAQSYESETSMPSEGEKTLSQGVARPYKRGRKPKALVEEEKMVEEVLEKTQLMLSVATGSYPRETETRGD HLKGGEGSSEREFVRYEADKLMECLGRIVNILDRHPYLVEKYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	0	1
AT5G53940			Yippee family putative zinc-bi...		Lus10015416 [exp]	3.2	0.8253
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	4.2	0.8108
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10028497 [exp]	5.5	0.7912
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	5.7	0.8462
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	5.7	0.7948
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	9.2	0.7785
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	9.3	0.7570
AT2G14910			unknown protein		Lus10013888 [exp]	9.9	0.7899
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	11.2	0.7837
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10042883 [exp]	14.1	0.8061

Compare expression of checked genes

Lus10020182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.