Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31250 566 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 529 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 514 / 8e-175 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 352 / 2e-112 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT1G50610 344 / 8e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 308 / 2e-95 RKL1 receptor-like kinase 1 (.1) AT5G58300 306 / 7e-95 Leucine-rich repeat protein kinase family protein (.1.2) AT3G02880 300 / 1e-92 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 293 / 6e-90 RLK902 receptor-like kinase 902 (.1) AT5G16590 287 / 6e-88 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026988 [exp] 1130 / 0 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 500 / 5e-169 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 451 / 1e-152 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 417 / 1e-136 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 409 / 5e-133 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 360 / 3e-119 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 355 / 3e-113 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 343 / 6e-109 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 325 / 5e-102 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002600 [exp] 688 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 658 / 0 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 578 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 567 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 566 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 559 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 369 / 2e-122 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 377 / 7e-122 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 368 / 8e-119 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 321 / 3e-100 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020183 pacid=23142051 polypeptide=Lus10020183 locus=Lus10020183.g ID=Lus10020183.BGIv1.0 annot-version=v1.0 ATGATCATTCCTCCCGCCAAGTCCTTCATCTTCCTTATCCTCCTCCTCCTCATCGTATCCTCCTCGCCATGTAATTTCTCTGCTGCCGCCGCCGACGAGG CGGAAGCTCTTCTCGACTTCAGAAAATCACTCTCCAACGCATCCGCCACTCTACAGAGCTGGAACGCCACTCTTCCCCCGCCTTGCAACCGCGACGAATC CACCTGGGCGGGCCTCCGCTGTGACAGGGGATCCGTCGAGAAGCTCATCCTCGACGGAATAGGAATCTCCGGGGTCATCGACGTAGAATCCCTAGCCAGA CTTCCCAGTCTGAGGACGTTCAGCGTCATGGGGAATGGCTTCCAAGGTCCCATCCCGGATTTGTCTAAGCTTCCCTTGAAGAATCTCTACCTTTCCGGGA ACCGATTCTCCGGCGGGATTCCGGACGGTGCTTTCCAAGGGATGAATTCGATCAAGGAGGTTTATCTTGCCAATAACCGGTTCGTGGGGCCGATTCCCGG GTCGATTCTCGGGTTGAAGAGACTGACCGAGTTGAGCTTGGAAGGGAATCAGTTCACCGGTTCTATACCGGATTTTCAGCAGCAGCTTACTGTGTTTAAC GTCTCCGGCAATCAGTTGGAGGGTCCCATTCCGGAAAGCCTTGGCGCCAAATTCGACCAGAGTTCCTTCTCCGGGAACAAAGGGCTATGCGGGAAGCCGC TGCCGCCATGCATATTGGAAGAAGGGAAGGGTAAACCGAAGACAAAGACAAAGACAATCCTAATCATCGTTGCAGTTATCGCCATACTACTGGTACTAAC TGCCATTATCGCCTGCACATTCATTCGAGACCGTGGATCCAAATCTGCAAACCGAGCCCAATTAAAGCAATACAACGACACAAAAGACCTCAAGAACTTC GGAGCCCAAAGCCCAATCAGCCCAAATAAGCAGGACCATAAGACGGATGAGGCGATGGCAGGAGGAGGGAGGAGAGGGGAGAATGGGAAGCTCAAGTTCG TGAGGAACGATAGATCAGAGACGTTCGATCTGCAGGAGCTTCTCAGGTCGTCGGCGGAGGTTCTCGGAAGCGGGACGTTCGGGTCTTCGTACAAGGCGGT GTTGCCGGAAGGGCCTGCGATGGTGGTGAAGAGGTTTAGGCAGATGGATAACGTTGGCAAGGAGGAGTTTTATGAGCATATGAAGAGGCTTGGGACACTG TCACACCCAAACCTGCTACCGCTAGTGGCGTTCTATTACAGGAAAGAAGAGAAGCTTTTGGTGTCTGATTTCGTTCACAATGCCAGCCTTGCTACGCATC TCCACGAAAAGAGACGATCAGGGGAGCCAGGTCTGCCATGGCCAACACGGTTGAAGATAATCAAAGGTGTAGCAAAGGGACTAGGCTATCTCTACAAACA ACTCCCCGATTTGCCACTGCCACACGGACATTTGAAATCCTCAAACATCCTGCTCGACCACACCTTCCAACCTCTGCTCGCCGATTACGCCCTCTCCCCA GTCGTAAATCCAGATCAAGCTCAATCCGTGATGGTGGCTTACAAGTCCCCGGAGTTCATCCAAACGGGACGCACAACGAGCAAGACCGACGTCTGGAGCC TAGGGATCCTGATCCTGGAGGTCCTGACAGGGAAATTCCCGGCGAACTACCTCCTCCGGCAAGGGAAAGGAGGAGGAGATCAGGCGTCGACGAACGCAGA TCTGGCGGCGTGGGTGAACTCGGTGGTGAGGGAGGAGTGGACCGGGGAGGTGTTCGATAAGGAGATGAAAGGGACGAAGAACGGTGAGGGGGAGATGCTG AAGCTGCTTAAGATCGGGATGTGCTGCTGCGAGTGGAACGTGGAGCGGCGGTGGGAGTTGACGGAGGCGGTGGTGAGAATTGGTGAGCTGAAGGAAAAGG AGGAAGAAGAAGGGAATGAGGATTATTGCAGCTCGATTGGGAGCGACGGGGATCTGTACTCTTCTAGGGCTATGAATGAGAATGAATTCTCCTTCTCCAT CACTGCCTGA
AA sequence Show only first row Show all	>Lus10020183 pacid=23142051 polypeptide=Lus10020183 locus=Lus10020183.g ID=Lus10020183.BGIv1.0 annot-version=v1.0 MIIPPAKSFIFLILLLLIVSSSPCNFSAAAADEAEALLDFRKSLSNASATLQSWNATLPPPCNRDESTWAGLRCDRGSVEKLILDGIGISGVIDVESLAR LPSLRTFSVMGNGFQGPIPDLSKLPLKNLYLSGNRFSGGIPDGAFQGMNSIKEVYLANNRFVGPIPGSILGLKRLTELSLEGNQFTGSIPDFQQQLTVFN VSGNQLEGPIPESLGAKFDQSSFSGNKGLCGKPLPPCILEEGKGKPKTKTKTILIIVAVIAILLVLTAIIACTFIRDRGSKSANRAQLKQYNDTKDLKNF GAQSPISPNKQDHKTDEAMAGGGRRGENGKLKFVRNDRSETFDLQELLRSSAEVLGSGTFGSSYKAVLPEGPAMVVKRFRQMDNVGKEEFYEHMKRLGTL SHPNLLPLVAFYYRKEEKLLVSDFVHNASLATHLHEKRRSGEPGLPWPTRLKIIKGVAKGLGYLYKQLPDLPLPHGHLKSSNILLDHTFQPLLADYALSP VVNPDQAQSVMVAYKSPEFIQTGRTTSKTDVWSLGILILEVLTGKFPANYLLRQGKGGGDQASTNADLAAWVNSVVREEWTGEVFDKEMKGTKNGEGEML KLLKIGMCCCEWNVERRWELTEAVVRIGELKEKEEEEGNEDYCSSIGSDGDLYSSRAMNENEFSFSITA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31250			Leucine-rich repeat protein ki...		Lus10020183 [exp]	0	1
AT2G46710			Rho GTPase activating protein ...		Lus10005998 [exp]	1.7	0.8651
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	8.5	0.8707
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	9.1	0.8736
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	13.2	0.8500
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	16.4	0.8368
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	16.9	0.8072
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	18.3	0.8449
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	25.9	0.8308
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	27.0	0.8632
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	28.8	0.8299

Compare expression of checked genes

Lus10020183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.