Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 681 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 650 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 587 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 560 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 553 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 548 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 548 / 0 protein kinase family protein (.1) AT2G07020 533 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 512 / 2e-174 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 466 / 4e-157 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026989 [exp] 964 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10021596 [exp] 629 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 620 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 596 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 588 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 581 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 553 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 549 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 511 / 2e-174 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002400 [exp] 694 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 656 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 579 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 543 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 535 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170742 [exp] 527 / 4e-180 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 525 / 8e-180 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 501 / 3e-169 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 354 / 7e-114 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G170901 [exp] 347 / 3e-112 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020185 pacid=23142028 polypeptide=Lus10020185 locus=Lus10020185.g ID=Lus10020185.BGIv1.0 annot-version=v1.0 ATGATGAACAGGTCTCCATTGACTAGAAATGCTGTAAATGCAAAATCATACGGTGAATTAAGACTACCAGACACTGATATATCATTTGTCAGCTCCGGAA GGCCAAGCATTGATCGAATGTTCCCAGGTTACTATGATAACAACGCTGCCTCCTCGGAGGGTGGGCGACCCCAACGCTTATCGAACGTTTCGGATTTCGA AAATGATCTGATCAATAGCTTTGAGTCGATGCAACAACAGCATGCAGGTAGGAGGTCACTAGATATCACCTCCTCCCCAAGACTATCCTCTGTCTCCCAG GAGAATGAAAGGCTCTCTTCAGTATCTCAATCTATGGACGATGTGGAAGCTGAAATGAGAAGGCTAAAGCAGGAGGTTAAGCAAACAATGGAAATGTACA ACGCAGCATGCAAAGAAGCACTTGCAGCAAAACACAAGGCAAAAGAGCTAGCACAGTTGAAAGCAGAAGAAGAGAGGAAGCTGGAAGAAGCACGATTGGC AGAGGAAACTGCTTTGGCGATAGCAGAGAGTGAGAAAGCCAAGACGAAAGCTGCAATAGAGGTTGCAGAGGCAGCACAGAGGATAGCAGAGGTAGAGGCT CAAAAGAGAATTAGAGCAGAGATGAAAGCTCGTCAAGAAGCTGAAGAGAAGAAAAAGGCACTGGACACCATTATGCATTCTGATGTTAGGTACAGAAAAT ACTCAATCGAGGAGATCGAAGTCGCCACTGAGAATTTCTCAGACAGCCGGAAAATTGGAGAAGGGGGTTATGGTCCTGTGTATAGGTGCCATCTTGATCA TACCCCTGTCGCCATTAAGGTCCTACGTCCTGATGCTGCTCAAGGAAGGTCCCAATTTCAACAAGAGGTTGAGGTGTTGAGTTGCATAAGGCACCCAAAC ATGGTTCTATTACTAGGAGCTTGCCCAGAATATGGATGCTTAGTCTACGAATACATGGCCAACGGAAGCTTAGACGACCGTCTATTCAGGAGAGGCAACA CACCTCCTCTTTCATGGCAGCAAAGATTCCTAATCGCAGCCGAGATCGGAACGGGATTGCTATTCCTCCACCAAACCAAACCCGAACCGTTAGTTCACCG CGACCTCAAACCGGGAAACATCCTCCTGGATCGCAACTTCGTGAGCAAGATTAGCGACGTCGGACTAGCGAGGCTGGTCCCGCCAGCGGTGGCCGACAGC GTGACGCAGTACAGAATGACGTCGACGGCGGGAACATTCTGCTACATAGACCCCGAGTACCAGCAGACAGGAATGCTAGGGGTAAAATCAGACATTTACT CGTTAGGGATAATGTTCTTGCAGATAATAACGGGGAAGCCGCCGATGGGACTGACGCACCATGTTGATAGAGCGATTGAGAAGGACACGCTTTCTCAGAT GCTGGATCCTGCCGTGCCCGATTGGCCCCTGGAGGAAGCTAAGCAGTTTGCTGAGCTGGCATTGAAATGTGCGGAGCTTAGGCGGAAAGATCGGCCGGAT TTGGGGAAGGTGGTGTTGCCGGAGCTCAACCGGTTCAGAATAATGGCGGAGGAGAGTATACAGCAGAAGGAGCAGCTTCCGTATTTCGCGGGGAGTTCTA TCCGTTCCGGTAAAGCTTCTCAGGTTTCTTCTCTTAAACTTAATGAACCTGCTTCTGTATAG
AA sequence Show only first row Show all	>Lus10020185 pacid=23142028 polypeptide=Lus10020185 locus=Lus10020185.g ID=Lus10020185.BGIv1.0 annot-version=v1.0 MMNRSPLTRNAVNAKSYGELRLPDTDISFVSSGRPSIDRMFPGYYDNNAASSEGGRPQRLSNVSDFENDLINSFESMQQQHAGRRSLDITSSPRLSSVSQ ENERLSSVSQSMDDVEAEMRRLKQEVKQTMEMYNAACKEALAAKHKAKELAQLKAEEERKLEEARLAEETALAIAESEKAKTKAAIEVAEAAQRIAEVEA QKRIRAEMKARQEAEEKKKALDTIMHSDVRYRKYSIEEIEVATENFSDSRKIGEGGYGPVYRCHLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPN MVLLLGACPEYGCLVYEYMANGSLDDRLFRRGNTPPLSWQQRFLIAAEIGTGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPAVADS VTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQIITGKPPMGLTHHVDRAIEKDTLSQMLDPAVPDWPLEEAKQFAELALKCAELRRKDRPD LGKVVLPELNRFRIMAEESIQQKEQLPYFAGSSIRSGKASQVSSLKLNEPASV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10020185 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Lus10020184 [exp]	8.4	0.5733
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	13.6	0.6243
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	20.4	0.5827
AT4G19950			unknown protein		Lus10017130 [exp]	25.2	0.6041
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10003313 [exp]	30.1	0.5986
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	34.9	0.5958
					Lus10022950 [exp]	66.3	0.5601
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	69.2	0.5518
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	69.8	0.5467
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023197 [exp]	86.2	0.4822

Compare expression of checked genes

Lus10020185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.