Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31210 1180 / 0 DNA topoisomerase, type IA, core (.1) AT5G63920 105 / 4e-23 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1) AT2G32000 78 / 2e-14 DNA topoisomerase, type IA, core (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026990 [exp] 943 / 0 AT4G31210 668 / 0.0 DNA topoisomerase, type IA, core (.1) Lus10026991 [exp] 594 / 0 AT4G31210 490 / 4e-160 DNA topoisomerase, type IA, core (.1) Lus10004959 [exp] 68 / 3e-11 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279700 [exp] 1256 / 0 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1) Potri.005G067100 [exp] 103 / 2e-22 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.014G148800 [exp] 52 / 1e-06 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0413 [flax] [poplar] PF01131 [flax] [poplar] Topoisom_bac DNA topoisomerase CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01396 [flax] [poplar] zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020186 pacid=23141978 polypeptide=Lus10020186 locus=Lus10020186.g ID=Lus10020186.BGIv1.0 annot-version=v1.0 ATGGTTGTTGAATCTGTTACAAAGGCGAAGGTAATTCAAGGCTATCTTGGCAGTATGTATGAAGTATTACCTAGTTATGGCCACGTGCGTGACTTAGCTG CCAGATCAGGATCAGTTCGGCCTGATGAGGACTTCAGTATGGTGTGGGAGGTTCCGTCTGCTGCTTGGACTTATCTTAAGAGCATTAAAGTTGCTCTAAG TGGAGCAGAAAATCTTATTCTTGCGTCAGACCCTGATCGTGAAGGAGAGGCTATCGCTTGGCATATTATTGAGATGTTGCAGCAGCAAGATGCCCTACAT GAGGGTATCAATGTAGCAAGGGTTGTCTTTCATGAAATAACAGATGCATCCATTAAAAGTGCTCTGCAAGCGCCAAGACATGTTGATGTGAATTTGGTAC ATGCTTACTTAGCAAGGCGTGCTCTTGATTATCTGATTGGATTCAACATTTCACCATTATTATGGAGGAAATTACCAGGGTGCCAATCAGCAGGCCGTGT GCAATCTGCTGCACTTGCTCTTATATGTGACAGGGAAACTGAAATTGATGACTTTAAGCCACAGGAATATTGGAGTATTGAGGCTAAGTTGAATAAGAAA GAACCAGGTTCTTCTTCACTCAATGCACGCTTGACCTGTTTTGATTCCAAAAAGTTGAATCAATTCTCATTTAGTTCCGGTAAGGAGGTAGAGGATGTCG AACATCAGATTAAAGCTACAACTTTTGAAGTTGTTGGCTCAAAAAAAGGGCAAATTCGAAGAAACCCCCCAACTCCTTACATAACTTCAACACTCCAGCA GGATGCAGCAAACAAATTACAGTTCAACACATCATACACAATGAAGCTTGCACAAAAACTCTATGAAGGCGTTGAATTATCAAAGGGGAAGGCTAGGGGA TTGATTACATATACCAGAACTGACGGACTGCATGTTTCAGATGAAGCTCTCAAGGATATACGCGGTTTAATTACTGAACGGTATGGCCCGGGTTTTGCTT CAGAGAGTGTCCGCAAGTATTTTAAGAAGGTTAAGAATGCTCAAGAGGCACATGAAGCAATCAGACCCACTGACATGAAGATTTTCCCTTCAATGCTTGC TGGTATTCTTGACGAAGATGCCTTGAAGTTGTACACCCTTATCTGGTCTCGTACTTTGGCTTGCCAAATGGAGCCTGCTATAATCGAACAGTTGCAAGTA GACATTGGAAATGCTAGCAAGTCAATCATATTCAGATCTACGTGTTCAGGGCTTGGATTTCCTGGCTATCAGGCAGTTTATCAGGATGTTGAAACTAAAG CTTTAAGAGGGAAGGAAGACGAAGAGGACCAATATAAAGCAGTTTTTGGGATTCTTAATTCACTGAAGGCAGGGGACCCAGTGTTTATTGCTGCAGTTGA ATCCAAGCAGCACTTTACTCAGCCTCCGCCACGATATTCTGAAGCATCATTGATTAAGAAGCTGGAGGAACTTGGGATCGGAAGGCCTTCAACTTATGCC AGCACATTAAAAGTCTTGCAGGACAGGAAATATGTGACCGTGAAAAGTCGTGTTATGAACCCAGAATTTCGTGGTCGAATGGTCTCTGCATTTCTTTCTA ACTATTTCACGGAGGTCACAGATTACAGCTTCACTGCTGACATGGAGACTGAGCTTGATAATGTTTGTGCTGGACTTACTGAATGGAAAGGTCTTCTCAG AGATTATTGGACGCGATTTAGTTCCTATTGCAGTGGCACTGAGAATGTCCACATTCATCAGGTGGAGAAGATGTTAGAGAAAAAGTTTGGAGACCTTTTG TTTGGCTCACTCCGTTCTGATACCAGAACATGCCCCAGTTGTATGGAGGGCACGTTGATTTTCAAAGTCAGTCGATATGGTGCAGGCTACTTCATTGGCT GTGATCAGCATCCATCGTGCAAGTATATTGCTAAGACATTGCTGACGAATGAAGAAGAAGAAGACGAAGAAGCTCCCCAGAGCAATCATGTTGTCGATGA ACCAAAAGTATTAGGTGTTCATCCCGTTTCGAAGGAAAAGATTTTAATGAAGAAAGGTCCTTATGGATTCTACGTACAACTCGGGGAAGATAGGAAGGAC TACATTCCTAAAAGAACATCTCTTTCCCATGTAAAGGATGTCGATGCCGTTACACTGGAAGAGTCTCTGAAGTTGTTGCGCTACCCAATGACACTGGGGA ACCATCCCAAGGATGGGCATCCTATACTATTAAAGCTTGCGAAGAATGGGTTTTCTGTTAGACATCGACGCACAATTGCTTCCGTTCCCAAGAACGTAGA CCCAGATGATATAACCGTGGAGAAAGCAATGCAGTATTTATCAAGTAAAGATGTAAGAAGAAGTGGCCGACCCAAAGGTGCAGCCAAGGTTGAAGCAGCA ACAGCAGTGGAAGCAGCTAGCTAA
AA sequence Show only first row Show all	>Lus10020186 pacid=23141978 polypeptide=Lus10020186 locus=Lus10020186.g ID=Lus10020186.BGIv1.0 annot-version=v1.0 MVVESVTKAKVIQGYLGSMYEVLPSYGHVRDLAARSGSVRPDEDFSMVWEVPSAAWTYLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLQQQDALH EGINVARVVFHEITDASIKSALQAPRHVDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALALICDRETEIDDFKPQEYWSIEAKLNKK EPGSSSLNARLTCFDSKKLNQFSFSSGKEVEDVEHQIKATTFEVVGSKKGQIRRNPPTPYITSTLQQDAANKLQFNTSYTMKLAQKLYEGVELSKGKARG LITYTRTDGLHVSDEALKDIRGLITERYGPGFASESVRKYFKKVKNAQEAHEAIRPTDMKIFPSMLAGILDEDALKLYTLIWSRTLACQMEPAIIEQLQV DIGNASKSIIFRSTCSGLGFPGYQAVYQDVETKALRGKEDEEDQYKAVFGILNSLKAGDPVFIAAVESKQHFTQPPPRYSEASLIKKLEELGIGRPSTYA STLKVLQDRKYVTVKSRVMNPEFRGRMVSAFLSNYFTEVTDYSFTADMETELDNVCAGLTEWKGLLRDYWTRFSSYCSGTENVHIHQVEKMLEKKFGDLL FGSLRSDTRTCPSCMEGTLIFKVSRYGAGYFIGCDQHPSCKYIAKTLLTNEEEEDEEAPQSNHVVDEPKVLGVHPVSKEKILMKKGPYGFYVQLGEDRKD YIPKRTSLSHVKDVDAVTLEESLKLLRYPMTLGNHPKDGHPILLKLAKNGFSVRHRRTIASVPKNVDPDDITVEKAMQYLSSKDVRRSGRPKGAAKVEAA TAVEAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	0	1
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	1.4	0.9517
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	2.4	0.9515
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	2.6	0.9551
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	3.5	0.9428
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10036477 [exp]	4.0	0.9168
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	4.5	0.9128
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	5.5	0.9184
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	6.3	0.9384
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	6.9	0.9310
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10028211 [exp]	9.5	0.9009

Compare expression of checked genes

Lus10020186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.