Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026991 [exp] 470 / 3e-164 AT4G31210 490 / 4e-160 DNA topoisomerase, type IA, core (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279700 [exp] 59 / 1e-09 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020187 pacid=23142029 polypeptide=Lus10020187 locus=Lus10020187.g ID=Lus10020187.BGIv1.0 annot-version=v1.0 ATGACAACACGTCTGCACCGAAGCTTCTTATCCCTTTCGTCTACTTCCTCCTCCTCTTATTTCCCTGCCCCTTCTTCCTCTTCATCTTACTCGCCGCTGC TGGTTTTGCGGCTTAATTCGTTAATGTCCAAGTGCGGGCCGCTGCAGAATGTTTCGGGCTTTGGCTTGATCCCTCCTCGTCTACGATGCAAGAACTTCAC ACACCTTAGAGTGAAAGGCTCCAGATTGTCTTCAGCGGCGGGTTCCCAAGGCTTCACTGATGCTTGTAAGTCTGTTTATCCACGAAGTGTAAGAATCCCT TTGACTACATCATGTTACTCCAATTTGAATGGAAGGATTGGATTGAGAGGGCATTGTTATGGAGCTATTTCGGTTCGACATTTTTCTCAATCGCCCGAAA CCAGTTCCACTCAGGATTTGTCGAGTAAAGCCTCCAAGGTTTCTAAGACTCGGGCTGCAAAGCAGAAAAAAAGTCCTGCTAATTCGAGTGTCTTAACCGC TAATGGTGTTGATGCCTTGAATTCAAGTGATGGTATCAATGGAAACGTGATACTTGGTACTGAAGCGAACCAGACTGGCAATGTTAATGGAAAGGCGAAG CAGTCAAAAAGTAAAAAAAGTAAAGGGCGACCTACTGCTGCTGCTGCTTCTCTAGAGAAAGAAGCTGTTGGTGATTCTGGCAGAAGTAAATCAGAGAACG TTTGTAAACTGACGTTGCTAGCCTTTCAGAAAAAGTCTACTGAAAAGGCATCCGAACAAGTGCTAGATGTTTCAGCTTCTACGAAACAGAAGGCCAAAAA GGGAACTGGCAACTCTAGGAGAAAGAGCAGAGCTGCCAATGAGTCTACTGAGAAGCAAAAGCCTCGGGACATGAGCAACTTGAAGCCTCCTAGACAAGGG GCCTTGAAACCGTTGTATCCCCCTACAGGTAAAACTGTTATGAGTCTACTGAGAAGCAAAAGCCTCGGGACATGA
AA sequence Show only first row Show all	>Lus10020187 pacid=23142029 polypeptide=Lus10020187 locus=Lus10020187.g ID=Lus10020187.BGIv1.0 annot-version=v1.0 MTTRLHRSFLSLSSTSSSSYFPAPSSSSSYSPLLVLRLNSLMSKCGPLQNVSGFGLIPPRLRCKNFTHLRVKGSRLSSAAGSQGFTDACKSVYPRSVRIP LTTSCYSNLNGRIGLRGHCYGAISVRHFSQSPETSSTQDLSSKASKVSKTRAAKQKKSPANSSVLTANGVDALNSSDGINGNVILGTEANQTGNVNGKAK QSKSKKSKGRPTAAAASLEKEAVGDSGRSKSENVCKLTLLAFQKKSTEKASEQVLDVSASTKQKAKKGTGNSRRKSRAANESTEKQKPRDMSNLKPPRQG ALKPLYPPTGKTVMSLLRSKSLGT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020187 [exp]	0	1
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	14.3	0.8233
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	46.5	0.7595
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	61.6	0.7734
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	64.9	0.7530
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	67.1	0.7264
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10011485 [exp]	77.6	0.7641
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	80.3	0.7688
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011103 [exp]	85.9	0.7743
AT5G44150			unknown protein		Lus10005598 [exp]	88.0	0.7629
AT5G58100			unknown protein		Lus10008551 [exp]	90.5	0.7711

Compare expression of checked genes

Lus10020187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.