Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65410 500 / 2e-179 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT1G67940 106 / 1e-26 ABCI17, AtSTAR1, ATNAP3 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) AT1G27940 105 / 1e-24 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G62150 102 / 8e-24 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 102 / 2e-23 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02530 101 / 2e-23 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G28010 100 / 5e-23 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G01820 99 / 1e-22 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT1G02520 98 / 4e-22 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G01830 97 / 6e-22 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026992 [exp] 657 / 0 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10035453 [exp] 109 / 2e-27 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10004583 [exp] 106 / 7e-25 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10036616 [exp] 102 / 6e-24 AT3G28345 479 / 6e-159 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 102 / 9e-24 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10009988 [exp] 101 / 3e-23 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 101 / 3e-23 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10043069 [exp] 100 / 9e-23 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10010068 [exp] 98 / 5e-22 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137000 [exp] 522 / 0 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.002G212701 [exp] 516 / 0 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 113 / 5e-29 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.011G133800 [exp] 102 / 1e-23 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G354900 [exp] 100 / 8e-23 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.018G141300 [exp] 100 / 9e-23 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.010G003000 [exp] 98 / 4e-22 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.005G064300 [exp] 97 / 5e-22 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.001G417600 [exp] 96 / 2e-21 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113500 [exp] 96 / 3e-21 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10020188 pacid=23141966 polypeptide=Lus10020188 locus=Lus10020188.g ID=Lus10020188.BGIv1.0 annot-version=v1.0 ATGCAAACTAAGGGCATTCTCTCCTTACCCAGTTCAACAAGGATTCCCATCAGCTTACCGTGTGGTTCATCATGGCCAAGCTCTCTATGTTACATGCAGA GGAAACAACAAAGAAAGATTACTAGTGCTTGTGTGGCACCTCCTCCAAATATAGGCAGTGAAGGATTTTCCAAAACTGCATACAATACGAGCCGATCAGA GAAGTTGTGCTCAGCATTGGAACCAGAGACTGATTCTGATGTTCTTATTGAATGTAAAGATGTGTACAAGTCATTTGGTGAAAAACATATACTAAGAGGT GTGAGCTTCAAGATCAGACATGGTGAAGCAGTTGGAATAATTGGACCTTCTGGCACTGGGAAATCAACAATTTTGAAAATTATGGCTGGACTCCTAGATC CAGACAAGGGTGAGGTTTATATACGAGGTACGAGAAGAGTTGGGTTGATTAGCGACAATGAGATGTCTGGCTTGCGAATTGGACTGGTTTTCCAAAGTGC AGCACTTTTTGATTCTTTAACTGTTCGTGAGAATGTTGGTTTCTTGCTATATGAAAATTCTACAATGCCAGAGGCGCAAATCTCAGAACTTGTGACGGAG ACCTTGGCTGCTGTTGGTTTAAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCTGGTGGAATGAAAAAAAGAGTTGCTTTAGCTCGGTCTATTATTT TTGATTCCACCAAGGCAGCCATCGAACCGGAGGTACTTTTGTATGATGAACCGACAGCTGGACTCGATCCAATCGCCTCAACTGTAGTTGAAGATCTCAT CCGTTCAGTCCATATGACTGGTGAGGATGCAGTCCATAAACCTGAGAAGATTGCTTCGTATGTGGTTGTCACTCATCAACACAGTACCATTAGAAGGGCT GTCGACAGGTTGTTGTTCCTTCATAAAGGCAAGGTCGTCTGGCAAGGAATGACTGATGAATTCACTACGTCGACCAATCCAATTGTCCAACAGTTTGCGT CTGGGAGTCTGGATGGTCCGATTAAATATTAG
AA sequence Show only first row Show all	>Lus10020188 pacid=23141966 polypeptide=Lus10020188 locus=Lus10020188.g ID=Lus10020188.BGIv1.0 annot-version=v1.0 MQTKGILSLPSSTRIPISLPCGSSWPSSLCYMQRKQQRKITSACVAPPPNIGSEGFSKTAYNTSRSEKLCSALEPETDSDVLIECKDVYKSFGEKHILRG VSFKIRHGEAVGIIGPSGTGKSTILKIMAGLLDPDKGEVYIRGTRRVGLISDNEMSGLRIGLVFQSAALFDSLTVRENVGFLLYENSTMPEAQISELVTE TLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDSTKAAIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTGEDAVHKPEKIASYVVVTHQHSTIRRA VDRLLFLHKGKVVWQGMTDEFTTSTNPIVQQFASGSLDGPIKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	0	1
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10018872 [exp]	3.5	0.7992
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	4.9	0.8098
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007500 [exp]	6.2	0.8209
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	15.5	0.7600
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	19.1	0.7304
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	19.3	0.7767
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	27.3	0.7882
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10043314 [exp]	35.1	0.7765
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	36.4	0.6740
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	39.2	0.7199

Compare expression of checked genes

Lus10020188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.