Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65380 690 / 0 AtRLP10, CLV2 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) AT2G26330 228 / 1e-63 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73066 216 / 2e-61 Leucine-rich repeat family protein (.1) AT3G24240 220 / 2e-60 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G25910 214 / 4e-59 AtRLP52 receptor like protein 52 (.1) AT5G65700 209 / 5e-57 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 209 / 1e-56 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G56370 208 / 1e-56 Leucine-rich repeat protein kinase family protein (.1) AT2G25470 207 / 1e-56 AtRLP21 receptor like protein 21 (.1) AT5G48940 206 / 1e-55 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026993 [exp] 1203 / 0 AT1G65380 759 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10023323 [exp] 229 / 2e-63 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 226 / 2e-62 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 223 / 6e-62 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 219 / 3e-60 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023677 [exp] 218 / 8e-60 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 216 / 3e-59 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 213 / 4e-58 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 213 / 5e-58 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087200 [exp] 854 / 0 AT1G65380 839 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Potri.012G027600 [exp] 229 / 2e-63 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.005G235100 [exp] 223 / 2e-61 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G262800 [exp] 222 / 3e-61 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.019G021700 [exp] 221 / 5e-61 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 221 / 6e-61 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.007G009200 [exp] 221 / 8e-61 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G037400 [exp] 220 / 2e-60 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007600 [exp] 219 / 2e-60 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.013G048800 [exp] 219 / 2e-60 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020189 pacid=23142015 polypeptide=Lus10020189 locus=Lus10020189.g ID=Lus10020189.BGIv1.0 annot-version=v1.0 ATGGAAGTGAAATGGAGTTGTATTTTGCTGCCGCTGCTTGTATTTTGCTCGCGATGTCTCTCGATTGATATTAATCCCAAAGATAAAGCTTCTCTGTTAT TGATTCGGTCCTGGCTCGAAGACCCGAACCACAGCTTGTCAAGCTGGGTTGGTTCCAACTGCACAAACTGGACAAGGATTACATGCCACAACCGCACAGG CCAGGTTGTTTACATGGATTTAACCAGCATGAATCTCGCCGGTCGAATTCATCCCAGCTTGTGTCACCTCGACGCTCTTGAGTCCCTGGTTCTTTCTCAA AACCGGTTTATGGGTCAAATTCCAGCATGTTTGGGTTGGTTACAGAATCTCAGAACGGTTGATCTCAGTCATAATAGATTTGGTGGTTCTCTGCCTGATA ATCTCTCGAGGCTCAGTCAGTTGAAAGAGCTTATACTACGTGGCAACCAGGGTTTGGGAGGAGGTGGTATCATTCCTGGCTGGATTGGGAATTTCTCAAC CAGTTTGGAAAAGCTTGATTTCGGTTTCTGTTCATTCATTGGTGAGCTTCCTCAGAGTTTGTTTTACTGCCAGTCCTTGAAGTACTTGGATCTTGAGAAC AACTATCTATCAGGTACAATCAACGACTTCTATCAGCCTTTGGAATTACTTAATCTCGGATCGAATTTGCTTTCGGGTACTCTGCCATGTTATTCTGCTG CTGCACCATCCCTTAAGGTTCTGAATCTCGCAAACAACTCGATTCTCGGAGGGATTCCTACCTGCATTGCTTCGCTCGAAAAATTAACGCATCTCAACTT GTCGTCCAATCGTTTGGAGTATGCTCTATCGCCGAGGATCGTATTCTCCGAGAATCTTCTTGTGTTGGACTTGAGTTACAATGATCTGTCCGGTCCACTC CCAGCTAATGTTGCTTCTACGACTGAGAAATCGGGGCTTGTTCTTCTTGATCTTTCTCGCAATCGTTTCTCCGGCTGTATACCATTGAAGATGACCGAGT TAAAGAGTCTGCAGGCTTTGTTTCTTTCCCACAACTTGCTCACTGGGGAAATCCCGGCGAGAGTTGGAAACCTGACTTACCTTCAAGTGATAGATTTGTC ACACAACTCGCTTTCGGGTTCGATACCTTTCACGATTGTAGGGTGTTTTCAGTTGCTTGCATTGGTGGTTAACAACAATAACCTTTCGGGGGAGATTCAA CCGGAACTGGATGCCTTGGACAGCTTGAAGATACTTGATATAAGCAGCAACAGAATCTCAGGTGAGATTCCTTTAACTTTGGCTGGCTGCAAGTCTCTTG AGGTTGTGGATTTTAGCTCCAACAATCTCTCCGGCAATATAAACGACGCAATAACGAAATGGTCGAATTTAAAGTACATCTCCCTTGCTCGAAACAAGTT CAGTGGAAGTCTTCCCAGTTGGCTCTTCTCTTTTGCAGCAATCCAGATGATGGATCTCTCAGGAAACAGATTCTCTGGCTTCATACCAGATGGTAATTTG AACGTTAGTTTCGACGTTAGCAGCAACAATGCAAGCTCGAGTCAGAGACTTCTTCCGATGGATGAATCGCTTACAGAGATGCGAATGGCCGAGATCAAGA TATCTGCTGCAGTTGTTGACATCAATGAGTTGAGCTTTAGTTACCAACTTCCTTCTTCCCTTGTTGGCATCGACCTATCCAATAATTTGCTACGCGGAGA AATTCCAGATGGTGTATTTGGGCTGCGAGGTTTGGAGTACTTGAACTTGTCGTACAACTATCTCGACGGACAGATTCCGAGCTTGGACAAGATGTGGAGT TTGAGGGCGTTGGATTTGTCGCACAACACTCTATCTGGTCAGATACCGGAGAACATTTCCAAACTTGCAGTCCTTGACTTGTCCTACAACAGCTTTTCAG GACTGATTCCGAAGAAGGAGAGTTACAAGAGGTTCCCAGGTGCATTTGCTGGGAATCCACATTTGTGCGTCGAGCTCTCTAGCGAAAGATGCAATGGCTA TGATGCTGCAAGGCTTCCTGCAATGCCTTGGAGATCATTTGGAAAATCTGAGCGACCAATCTCAGTCATTGCGGCGTGCTCCTTGAGTGCTGTCATGATG CTACTCTAG
AA sequence Show only first row Show all	>Lus10020189 pacid=23142015 polypeptide=Lus10020189 locus=Lus10020189.g ID=Lus10020189.BGIv1.0 annot-version=v1.0 MEVKWSCILLPLLVFCSRCLSIDINPKDKASLLLIRSWLEDPNHSLSSWVGSNCTNWTRITCHNRTGQVVYMDLTSMNLAGRIHPSLCHLDALESLVLSQ NRFMGQIPACLGWLQNLRTVDLSHNRFGGSLPDNLSRLSQLKELILRGNQGLGGGGIIPGWIGNFSTSLEKLDFGFCSFIGELPQSLFYCQSLKYLDLEN NYLSGTINDFYQPLELLNLGSNLLSGTLPCYSAAAPSLKVLNLANNSILGGIPTCIASLEKLTHLNLSSNRLEYALSPRIVFSENLLVLDLSYNDLSGPL PANVASTTEKSGLVLLDLSRNRFSGCIPLKMTELKSLQALFLSHNLLTGEIPARVGNLTYLQVIDLSHNSLSGSIPFTIVGCFQLLALVVNNNNLSGEIQ PELDALDSLKILDISSNRISGEIPLTLAGCKSLEVVDFSSNNLSGNINDAITKWSNLKYISLARNKFSGSLPSWLFSFAAIQMMDLSGNRFSGFIPDGNL NVSFDVSSNNASSSQRLLPMDESLTEMRMAEIKISAAVVDINELSFSYQLPSSLVGIDLSNNLLRGEIPDGVFGLRGLEYLNLSYNYLDGQIPSLDKMWS LRALDLSHNTLSGQIPENISKLAVLDLSYNSFSGLIPKKESYKRFPGAFAGNPHLCVELSSERCNGYDAARLPAMPWRSFGKSERPISVIAACSLSAVMM LL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	0	1
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	1.4	0.9461
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	2.4	0.9314
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	2.8	0.9159
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	3.5	0.9267
AT3G63430			unknown protein		Lus10003090 [exp]	3.5	0.9207
AT5G20950			Glycosyl hydrolase family prot...		Lus10034848 [exp]	4.5	0.9101
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	5.2	0.9116
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	5.5	0.9238
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	7.5	0.9175
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	8.1	0.9000

Compare expression of checked genes

Lus10020189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.