Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 157 / 8e-45 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 155 / 5e-44 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 105 / 3e-26 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 105 / 4e-26 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 105 / 4e-26 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G06536 42 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT2G22010 44 / 0.0002 RKP related to KPC1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009445 [exp] 285 / 4e-96 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 244 / 6e-81 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 174 / 7e-52 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 154 / 4e-43 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 145 / 6e-40 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 97 / 2e-22 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 86 / 7e-21 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 61 / 3e-10 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10016817 [exp] 46 / 3e-05 AT2G22010 1406 / 0.0 related to KPC1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 164 / 1e-47 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 154 / 2e-43 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G123800 [exp] 51 / 4e-07 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.014G025000 [exp] 50 / 1e-06 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.005G083800 [exp] 46 / 2e-05 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.007G081900 [exp] 43 / 0.0002 AT2G22010 1712 / 0.0 related to KPC1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10020190 pacid=23142044 polypeptide=Lus10020190 locus=Lus10020190.g ID=Lus10020190.BGIv1.0 annot-version=v1.0 ATGACAAGCTCAGAAATGCCGAAGAAGCTTGGCAAGGCCTCGAGGTTCGCCGTGGTTTCGCCGAATAAGCTCTCGGCCAAGTACTTTTGGCGGAGGATCA ACTCTGATTATGTGGGAACCGTGCAGGCTGACAAGTCAGCACCAGTCGACGGGACGACTATGTATTACTTCGAAATGCAGGTCAAGAACAATGGAGTGGA CGGCTTTATTTCGATCGGTTTCACGACGGCGGGGTATGACTTGACATCTCACCCCGGGTGGGGAACTAATAGTGTTGGATATCATGGCAACGATGGCATG TTTTATATCAATGGATCAAAATGTACTCCTCCTACGACAACCGATGCGGCAACCTTTACGAGGAACGACGTCGTTGGAGCTGGTATCGACTATGTTTCAA ATGAGTTCTTTTTCACAAAGAACGGAAGGCTAGTTGGCACGGCAATCAAAGAGTTCGATGGTCCACTCTTCCCTTCCATTTCAGTTCATAGCGAGGATGA AGAGGTCGAGGTCAACTTTGGAAAAAAACCGTTTCAGTACGATCATCGTTCAAAACATCTGGAGGAAAACCTGAAGAAGGTCGAGTCATCGTTGAAGAAG GCACTCGAAGAAAAGGAAAAGGAGGTTGCTAATTTGAAGTTGTCTAACGTGACTTCTGAGGGAAAATGGAAGGAGCTTTTGGAGGAGAAGCTCGACAAAT TAATGGAGAAGAGCGAGACATCATCGTTGAAAAAGGCGCTCAACGAAGAAGGAAAAGAGTGTGTAGCTGATCACCGTTGTTGCGAATGGGAGAAGGTAAT TGAGGAGAAGAACAAGGAATTGGCTTCTTTTAAAGATGTTTTGAAAGAGCTACTTAATTAA
AA sequence Show only first row Show all	>Lus10020190 pacid=23142044 polypeptide=Lus10020190 locus=Lus10020190.g ID=Lus10020190.BGIv1.0 annot-version=v1.0 MTSSEMPKKLGKASRFAVVSPNKLSAKYFWRRINSDYVGTVQADKSAPVDGTTMYYFEMQVKNNGVDGFISIGFTTAGYDLTSHPGWGTNSVGYHGNDGM FYINGSKCTPPTTTDAATFTRNDVVGAGIDYVSNEFFFTKNGRLVGTAIKEFDGPLFPSISVHSEDEEVEVNFGKKPFQYDHRSKHLEENLKKVESSLKK ALEEKEKEVANLKLSNVTSEGKWKELLEEKLDKLMEKSETSSLKKALNEEGKECVADHRCCEWEKVIEEKNKELASFKDVLKELLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	0	1
					Lus10016944 [exp]	1.7	0.9690
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	2.4	0.9686
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	4.9	0.9542
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	6.0	0.9638
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	6.2	0.9680
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	6.7	0.9529
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	7.1	0.9589
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	7.3	0.9587
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	7.4	0.9521
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	7.7	0.9510

Compare expression of checked genes

Lus10020190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.