Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09340 67 / 1e-12 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G35470 66 / 2e-12 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09250 47 / 2e-06 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 47 / 3e-06 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 47 / 3e-06 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020190 [exp] 233 / 5e-77 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 144 / 6e-42 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 84 / 1e-18 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 77 / 5e-16 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 75 / 1e-15 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10001544 [exp] 59 / 4e-10 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 54 / 3e-08 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10002729 [exp] 47 / 6e-07 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10012385 [exp] 47 / 4e-06 ND 42 / 2e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 81 / 1e-17 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 71 / 3e-14 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020191 pacid=23141963 polypeptide=Lus10020191 locus=Lus10020191.g ID=Lus10020191.BGIv1.0 annot-version=v1.0 ATGCCGAAGGAGCTTGGCAAGGCCTCGATGTTCGCCATCGTTTCGCTGAATAGGCTCTCGGCCAGGTTCTATAGCTCGAGGCTCTTCAGTGCTACGGGAG CCGTGCAGGCTGACAAGTCAGTGCCAGTCGACGGGATGACTATGTATTACTTCGAAATGCGGGTCAAGAACGGTGGCCTGCGCGGCTTCACTACGATCGG TTTCACGGCGGCGGGAAAGAACGGAAGGCTAGTTGGCACGGCAATCAAAGAGTTTGATGGTCCACTCTTCCCTTCCATTTCAGTTCATAGCAAGGATGAA GAGGTCGAGGTCAACTTTGGACAAAAACCGTTTCAATACGATCATCGTTCAAAACATTTGGAGGAAAACCTGAAGAAACTGAAGAAGGTCGAGTCATCGT TGAAGAAGGCACTCGAAGAAAAGGAAAAGGAGGTTGCTAATTTGAAGTTGTCTAACGTGACTTCTGAGGAAAAATGGAAGGAGCGTCTGGAGGAGAAGCT CGACAAATTAATGGAGAAGAGCGAGACATCGTCGTTGAAAAAGGCTCTCGACGAAGAAGGAAAAGAGTGTGTAGCTGATCACCGTTGTTGCGAATGGGAG AAGGTAATTGAGGAGAAGAACAAGGAATTGGCTTCTTTTAAAGATGTTTTGAAAGAGCTACTTAATTAA
AA sequence Show only first row Show all	>Lus10020191 pacid=23141963 polypeptide=Lus10020191 locus=Lus10020191.g ID=Lus10020191.BGIv1.0 annot-version=v1.0 MPKELGKASMFAIVSLNRLSARFYSSRLFSATGAVQADKSVPVDGMTMYYFEMRVKNGGLRGFTTIGFTAAGKNGRLVGTAIKEFDGPLFPSISVHSKDE EVEVNFGQKPFQYDHRSKHLEENLKKLKKVESSLKKALEEKEKEVANLKLSNVTSEEKWKERLEEKLDKLMEKSETSSLKKALDEEGKECVADHRCCEWE KVIEEKNKELASFKDVLKELLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	0	1
AT4G16400			unknown protein		Lus10038791 [exp]	2.0	0.9636
AT5G21910			unknown protein		Lus10038069 [exp]	2.8	0.9585
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	3.5	0.9389
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	6.0	0.9440
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	7.1	0.9522
AT2G20362			unknown protein		Lus10024963 [exp]	7.1	0.9460
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	7.2	0.9504
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10020669 [exp]	7.3	0.9298
AT2G39440			unknown protein		Lus10018300 [exp]	9.9	0.9425
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	10.5	0.9217

Compare expression of checked genes

Lus10020191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.