Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020192 pacid=23142032 polypeptide=Lus10020192 locus=Lus10020192.g ID=Lus10020192.BGIv1.0 annot-version=v1.0 ATGAAGACTCCACTCCCTTTCAAAGTCGTCAATAATCTCATCATCGTCGTCGACGGAGAAACTCGGAGGTGGGAGGAGCCGAAACAGGTAGGTGGGTGGA ACTTGAAAGGAGGCAGAGAAGTGAAGGGGATGGGTGGGAGGGTCCATCTATTATCACACCGCATATATCCACCGCGGCTTGCCCATCTATTATCACAAAC CCTCGACGCCCATGGCATCTTACCAGAAGCATCAGTCCATCAACCCGCTCCGGCTGTGCTTATCACTCTCTGCGACCCAAATCTTCCACTTGCGGATAGC GATGATGAGGAGATGTCCCTGAAGGTCATCGAGATACCAAGAAAAACTGCCCTCGTTGCTGTACGAGTGGTCCAGGGCGGGTTCTGCCTATGGCGACCCG CCCTGCCACATAATTTTTTACAGGGAGTCGTGGAGATGTACCGTCTCCAGCGACGCAAACCCCGACCGATCCGATGCTAG
AA sequence Show only first row Show all	>Lus10020192 pacid=23142032 polypeptide=Lus10020192 locus=Lus10020192.g ID=Lus10020192.BGIv1.0 annot-version=v1.0 MKTPLPFKVVNNLIIVVDGETRRWEEPKQVGGWNLKGGREVKGMGGRVHLLSHRIYPPRLAHLLSQTLDAHGILPEASVHQPAPAVLITLCDPNLPLADS DDEEMSLKVIEIPRKTALVAVRVVQGGFCLWRPALPHNFLQGVVEMYRLQRRKPRPIRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020192 [exp]	0	1
AT3G10460			Plant self-incompatibility pro...		Lus10016165 [exp]	1.4	0.9190
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10009250 [exp]	2.0	0.9182
AT5G03860		MLS	malate synthase (.1.2)		Lus10006282 [exp]	3.5	0.7909
AT1G74320			Protein kinase superfamily pro...		Lus10008675 [exp]	7.1	0.8130
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	12.8	0.7714
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	15.1	0.7695
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021863 [exp]	19.4	0.6408
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033078 [exp]	24.1	0.6867
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	25.1	0.7353
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	30.5	0.7390

Compare expression of checked genes

Lus10020192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.