Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16530 520 / 0 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 255 / 1e-82 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT2G01420 194 / 1e-56 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT5G57090 191 / 5e-55 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 184 / 3e-53 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT1G23080 179 / 3e-51 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 179 / 5e-51 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G73590 166 / 2e-46 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026994 [exp] 637 / 0 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 265 / 2e-86 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 263 / 8e-86 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10018007 [exp] 186 / 4e-58 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 185 / 8e-58 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009686 [exp] 180 / 7e-56 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 186 / 3e-55 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 184 / 2e-52 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 183 / 3e-52 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087000 [exp] 532 / 0 AT5G16530 513 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.019G052800 [exp] 530 / 0 AT5G16530 471 / 7e-168 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Potri.004G124200 [exp] 280 / 3e-92 AT5G15100 378 / 2e-130 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.017G078300 [exp] 277 / 2e-91 AT5G15100 358 / 5e-123 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 203 / 3e-61 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) Potri.010G112800 [exp] 187 / 8e-54 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 186 / 1e-53 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 186 / 2e-53 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 184 / 4e-53 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 185 / 5e-53 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10020193 pacid=23141979 polypeptide=Lus10020193 locus=Lus10020193.g ID=Lus10020193.BGIv1.0 annot-version=v1.0 ATGATAGGATGGGTGGACGTGTACAAGGTGATAGAGGCGATGGTACCGTTGTACGTAGCCCTGATACTGGGCTACGGCTCAGTAAGGTGGTGGAAGGTGT TCACGCCGGAGCAGTGTGGGGCCATCAACAGGCTGGTGTGCTACTTCACCCTCCCGTTGTTCACCTTCGAGTTCACCGCCCACGTAGACCCTTTCAAGAT GAACTACCGCTTTGTGGCTGCCGACGCGGTCTCGAAAGTCATTATAGTCGTTGTACTTGCCTTTTGGGCTAAGTTCAGCAGCAAAGGGAGTTATTGCTGG TCGATTACCAGCTTCTCCCTTTCGACGCTCACCAACTCCTTGGTAGTGGGCGTCCCTCTGATGAAGGCCATGTACGGCCCCATGGCGGTCGACCTCGTGG TCCAGGGCTCCGTGGTCCAGGCGATCGTCTGGCTCACACTTTTGTTGTTTGTGTTGGAGTTTCGTCGCACCGGGCTTGATGCTGTGGTTGTCTCGGTCCC GGATGATCATGCTGGCGGGAAAGATGTGGAGTCCATGCAGCAGACGACGACGACGATGCATGATCAGCCGTCGTTTTGGTATTTGATGAAGGTGGTGTGG GTGAAGCTGGCCATGAACCCCAATTCTTATGCCTGTATCATTGGCCTTGTTTGGGCCTTTGTTTCTAACAGGTGGAGTATTGAAATGCCGAGCATAATGG ACGGGTCAGTGTCGATTATGGCCAAAGCTGGAACAGGAACTGCTATGTTTAGCATGGGCATCTTTATGGCGTTGCAGGAAAAGTTGATAGCTTGCGGACC AAGTCTCACCGTAATAGGAATGGTGCTGAGATTCATTGCCGGTCCCGCTGCCATGGCTATCGGCTCCATCGTTGTTGGTCTGCACGGCGACGTTTTACGA GTTGCTATAATCCAGGCAGCTCTGCCGCAGTCCATTACTTCCTTCATCTTCGCCAAAGAATACGGCTTGCATGCTGAGGTCCTAAGCACAGCTGTGATAT TCGGAATGATAGTGTCGCTGCCGGTGTTGATAGCTTATTACGCAGCTTTGGAACTTGTTCATTGA
AA sequence Show only first row Show all	>Lus10020193 pacid=23141979 polypeptide=Lus10020193 locus=Lus10020193.g ID=Lus10020193.BGIv1.0 annot-version=v1.0 MIGWVDVYKVIEAMVPLYVALILGYGSVRWWKVFTPEQCGAINRLVCYFTLPLFTFEFTAHVDPFKMNYRFVAADAVSKVIIVVVLAFWAKFSSKGSYCW SITSFSLSTLTNSLVVGVPLMKAMYGPMAVDLVVQGSVVQAIVWLTLLLFVLEFRRTGLDAVVVSVPDDHAGGKDVESMQQTTTTMHDQPSFWYLMKVVW VKLAMNPNSYACIIGLVWAFVSNRWSIEMPSIMDGSVSIMAKAGTGTAMFSMGIFMALQEKLIACGPSLTVIGMVLRFIAGPAAMAIGSIVVGLHGDVLR VAIIQAALPQSITSFIFAKEYGLHAEVLSTAVIFGMIVSLPVLIAYYAALELVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	2.4	0.7206
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	3.3	0.6863
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	6.2	0.7091
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10026994 [exp]	6.3	0.7632
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	10.9	0.6965
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	11.0	0.6961
					Lus10009611 [exp]	12.4	0.6713
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	18.2	0.6582
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	28.9	0.6906
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	29.4	0.6267

Compare expression of checked genes

Lus10020193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.