Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36290 265 / 5e-90 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G68650 124 / 2e-35 Uncharacterized protein family (UPF0016) (.1) AT1G25520 124 / 2e-35 Uncharacterized protein family (UPF0016) (.1) AT4G13590 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 70 / 2e-14 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026995 [exp] 287 / 8e-99 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10034293 [exp] 124 / 3e-35 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 122 / 8e-35 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10035040 [exp] 126 / 1e-34 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10023685 [exp] 101 / 9e-26 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10011763 [exp] 101 / 1e-25 AT4G13590 429 / 6e-151 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10032330 [exp] 81 / 3e-18 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 73 / 4e-15 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1) Lus10021697 [exp] 41 / 0.0002 AT1G25520 94 / 5e-23 Uncharacterized protein family (UPF0016) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086700 [exp] 267 / 4e-91 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G053400 [exp] 265 / 3e-90 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.008G117900 [exp] 129 / 2e-37 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.019G116100 [exp] 126 / 2e-36 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 122 / 9e-35 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1) Potri.003G174600 [exp] 99 / 9e-25 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.001G053600 [exp] 99 / 1e-24 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 82 / 2e-18 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10020195 pacid=23142016 polypeptide=Lus10020195 locus=Lus10020195.g ID=Lus10020195.BGIv1.0 annot-version=v1.0 ATGGCAATGCGCCACCCAAAATCAACAGTTCTATCTGGAGCGCTTGCAGCCTTGTTTGTCATGACAGTACTTTCTACTGGACTGGGACGGATTGTGCCGA ACTTAATATCCAGGAAGCATACAAACAGTGCAGCTACAGTTCTCTATTTGTTTTTTGGACTGCGGTTGCTTTACATCGCGTGGAGATCAGATTCCAAAGC TTCTCAGAAAAAAGAAATGGAAGAAGTAGAAGAAAAGCTTGAATCTGGACAAGGGAAAACTAGCTTCCGTCGCTTCTTCTCAAGATTCTGCACGCCTATA TTTCTGGAGGCATTTATTCTGACATTTTTGGCGGAGTGGGGAGACCGTAGCCAGATTGCGACAATTGCTTTGGCTACGCATAAGAATGCAGTTGGGGTCG CGGTTGGGGCATGCATAGGGCACACCATCTGCACTTCGGTGGCGGTAGTAGGAGGGAGTATGCTAGCTTCCAAGATCTCCCAAAAGACGGTTGCTACCAT TGGAGGATTGCTCTTCCTCGGCTTTTCCCTCTCTTCTTATTTTTACCCTCCTCTATAG
AA sequence Show only first row Show all	>Lus10020195 pacid=23142016 polypeptide=Lus10020195 locus=Lus10020195.g ID=Lus10020195.BGIv1.0 annot-version=v1.0 MAMRHPKSTVLSGALAALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWRSDSKASQKKEMEEVEEKLESGQGKTSFRRFFSRFCTPI FLEAFILTFLAEWGDRSQIATIALATHKNAVGVAVGACIGHTICTSVAVVGGSMLASKISQKTVATIGGLLFLGFSLSSYFYPPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	0	1
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	1.4	0.8226
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	6.3	0.7600
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	6.9	0.7560
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	7.2	0.7917
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10026910 [exp]	11.3	0.7311
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	12.3	0.6730
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	12.6	0.7588
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	14.0	0.7188
AT3G11320			Nucleotide-sugar transporter f...		Lus10040234 [exp]	17.1	0.7683
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	17.5	0.7291

Compare expression of checked genes

Lus10020195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.