Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02830 503 / 2e-178 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 432 / 2e-150 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 352 / 1e-117 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 306 / 6e-100 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 280 / 6e-90 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G04990 259 / 2e-82 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 251 / 5e-79 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 226 / 3e-69 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 216 / 2e-65 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G12680 188 / 4e-54 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026996 [exp] 813 / 0 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10033962 [exp] 326 / 2e-107 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10013476 [exp] 322 / 2e-106 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10002880 [exp] 320 / 5e-105 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10007941 [exp] 318 / 1e-104 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 313 / 7e-103 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 304 / 2e-100 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 290 / 3e-93 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 276 / 6e-88 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086800 [exp] 719 / 0 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 717 / 0 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 344 / 7e-115 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 334 / 1e-110 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G223700 [exp] 306 / 5e-100 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.014G159500 [exp] 305 / 6e-100 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 219 / 5e-66 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 214 / 3e-64 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 208 / 2e-61 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 206 / 9e-61 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10020196 pacid=23142083 polypeptide=Lus10020196 locus=Lus10020196.g ID=Lus10020196.BGIv1.0 annot-version=v1.0 ATGGAATTTGACGCCTCCGGAATTCCGATGTCCCGTGAAGGAACTTCTCTGACACCGTCCTTGAACGAAGGTTCAATGTGGCAAGTTAACTTGAGAAGCA GTGAAGCAATGGAACCTGGGGTGTATCCTGAACGTCCTGGAGAGCCTGATTGTTCTTATTATATCAGAACAGGTCTTTGTAGATTTGGGGCCACTTGCCG ATTCAACCACCCTCCTAACAGAAAGCTGGCCATTGCTGCAGCAAGGATGAAAGGTGAATTTCCTGAAAGGATTGGACAGCCTGAGTGTCAGTTCTTCCTG AAAACTGGAACATGCAAGTTTGGAGCAACATGCAAGTTCCATCATCCTAAAGACAAGGCTGGGATGGCAGGAAGAGTTTCCTTGAATAGTTTGGGCTTTC CTCATCGACCAAATGAGGTTGAGTGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAGCACATGTAAATTTCACCATCCTCAACCGAGTAATTT AATGCTACCATTACGGGGTTCTCCTATTTATCCTACAGTTCAATCTCCAACAACTCCTGCGCAACAATCTTACCCAGGAGGACTTACAAACTGGTCAAGA GTGTCCTACATTACCAGCCCAAGGTGGCAGGGTCCTTCCAGTTATACTCCCCTGATACTTCCTCAGGGAGTTGTTTCTGTCCCTGGCTGGAATGCATATA GTGGTCAGGTGGGGTCAGTTTCGTCTCCTGATAGCCAACAACAAAGTGGAGTATACGGTAGCTCACACCAGAATGAGTCATCGAGTGCAGAAGCTTCTGG GGCTTTCTCTCCATATCGTTCAGGTTCTGTCTCTGTCGGCTATTATGCATTGCAAGGGGACAATGTTTTCCCAGAAAGACCCGGCCAGCCTGAATGCCAG TACTATATAAAGACCGGAGACTGCAAGTTTGGTGCAGTTTGCAGGTTTCATCATCCAAGAGAGAGATCAATTCCAGCTCCAGACTGTGTGTTGAGTCCTA TAGGCCTCCCTTTACGCCCTGGAGAACCGTTGTGTATCTTCTACTCTCGATATGGGATATGCAAGTTTGGTCCAAGTTGCAAGTTTGACCACCCTATGGG AATATTCACATACAATATGTCGGGATCAACTTCAGCTGATGCCCCGGTTCAACGTTTGCTTGGGTCTTCTTCGGGACCTGCTTCGTTGGCTCTAACTTCG GAAGGGCTAGTAGAAGCATCATCCGCAATGCCGAGGAGACTTTCATTGTCAGAGCCAAGACAAATGCCTTCTGGAGATGATGACATTGACACAGAGGGGT GA
AA sequence Show only first row Show all	>Lus10020196 pacid=23142083 polypeptide=Lus10020196 locus=Lus10020196.g ID=Lus10020196.BGIv1.0 annot-version=v1.0 MEFDASGIPMSREGTSLTPSLNEGSMWQVNLRSSEAMEPGVYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQFFL KTGTCKFGATCKFHHPKDKAGMAGRVSLNSLGFPHRPNEVECAYYLRTGQCKFGSTCKFHHPQPSNLMLPLRGSPIYPTVQSPTTPAQQSYPGGLTNWSR VSYITSPRWQGPSSYTPLILPQGVVSVPGWNAYSGQVGSVSSPDSQQQSGVYGSSHQNESSSAEASGAFSPYRSGSVSVGYYALQGDNVFPERPGQPECQ YYIKTGDCKFGAVCRFHHPRERSIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNMSGSTSADAPVQRLLGSSSGPASLALTS EGLVEASSAMPRRLSLSEPRQMPSGDDDIDTEG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	0	1
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	1.0	0.9491
AT2G35260			unknown protein		Lus10040089 [exp]	6.5	0.8892
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	8.8	0.8720
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	10.2	0.8957
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	17.4	0.8640
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10042119 [exp]	18.7	0.7735
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	21.0	0.8714
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	21.7	0.8756
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	21.9	0.8577
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	23.8	0.8778

Compare expression of checked genes

Lus10020196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.