Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24090 1157 / 0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) AT4G38880 49 / 8e-06 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1) AT2G16570 48 / 3e-05 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G34740 45 / 0.0002 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026998 [exp] 516 / 1e-177 AT3G24090 457 / 1e-154 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) Lus10035459 [exp] 50 / 5e-06 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 50 / 7e-06 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054500 [exp] 1196 / 0 AT3G24090 1157 / 0.0 glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases (.1) Potri.004G164000 [exp] 49 / 8e-06 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.009G125600 [exp] 46 / 8e-05 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF01380 [flax] [poplar] SIS SIS domain CL0052 [flax] [poplar] NTN PF00310 [flax] [poplar] GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence Show only first row Show all	>Lus10020198 pacid=23141969 polypeptide=Lus10020198 locus=Lus10020198.g ID=Lus10020198.BGIv1.0 annot-version=v1.0 ATGTGCGGTATATTTGCGTATCTGAATTACAATCTCCACAAGGAGAGGAGCTACATCCTTCAAGTACTCTTCAATGGCCTCCGCCGCCTCGAATACAGAG GCTACGACTCCGCCGGTATCTCCATCGACAATTCCTCTTCCCCTTGCCCACTCGTCTTCCGCCAAGAGGGAAAAATCGAGTCCCTCGTCAAATCCGTCTA CCAAGAGGTTTCCAGCATAAATTTAAACTTGGAAGAATCTTTCTCTGTCCATGCTGGGATAGCTCATACACGCTGGGCCACCCATGGAAAGCCAGCTCCA AAGAACAGTCATCCCCAGACTTCTGATTCCGGAAATGAGTTTTTGGTTGTCCACAATGGTGTCATTACAAATTACGAGGTGTTAAAAGAAACTCTAGTTC GCCATGGATTCACTTTCGAGTCTGAGACTGACACTGAAGTTATACCAAAGCTTGCCAAGTATGTTTTTGACAAAGCAAATGAAGAAGGAGGTCAAGTTGT TACATTTAGTCAAGTTGTTCTTGAAGTTATGTGTTATCTAGAAGGAGCTTATGCCCTCATTTTTAAGAGTCGGCATTATCCAAATGAGTTGATTGCATGC AAACGTGGAAGTCCGTTGTGGCTGGGTGTGAAGGAATTAACTGAGGATAACAATAGTGAGCCAACCTTTCAGGATGCTCATTTCGTTTCAAAGGATGGGA GGGCCAAAGAATTTTTCTTGTCCAGTTCAACCAACGCTATTGTTGAGCACACCAAAAAGGTCTTGATGATCGAGGATGGTGAAGTAGTGCACTTAAAGGA TGGAAATGTTTCGATCTTAAAGTTTGTGAATGACAAGTCAAGACATGGTCATGCCATTGCAAGACCAGCCTCTGTACAAAGAGCGTTATCTGTTCTGGAG ATGGAAGTTGAGCAGATAAATAAAGGAGACTATGAGCATTACATGCAGAAAGAAATCCATGAGCAGCCAGAATCTCTGACAACTACCATGAGGGGAAGAC TCATACAAGGAGGTTCCTGTAAGGCGAAGACCGTTCTTTTGGGGGGACTGAAGGATCACCTTAAAACAATCAGACGAAGCCGTAGAATTGTTTTCATTGG TTGTGGTACAAGTTATAATGCTGCACTAGCTAGTAGGCCCATCCTGGAGGAACTTTCAGGTGTTCCTGTTACCATGGAAATAGCTAGTGACCTGGTGGAT CGACAAGGACCAATATACAGAGAGGATACTGCAGTTTTTGTTAGTCAATCTGGTGAAACTGCTGATACATTGCTTGCTTTAGAATATGCCCTTGAAAACG GTGCATTATGTGTTGGCATAACAAACACTGTCGGCAGTGCAATTGCAAGGAAAACTCACTGTGGTATTCACTTGAATGCTGGTGCTGAAATCGGTGTAGC AAGTACCAAGGCTTACACAAGCCAAATAGTTGTGATGGCAATGCTTGCCCTAGCTATTGGAAGCGACACAATATCTAATCAAGCTAGAAGGGAGGCTATA GTTGATGGTTTATTTGACTTGCCAAACAAAGTTAGAGATGTACTGAAGCTTGACAATGAGATGAAGGATCTTGCAAATCAATTAATCGCGGAGCAGTCGC TGTTGGTATTCGGAAGAGGATACAATTACGCGACCGCCCTTGAAGGGGCTTTGAAGGTGAAGGAAGTTGCACTTATGCACAGCGAAGGGATGCTTGCTGG TGAAATGAAACACGGCCCCCTGGCTTTGGTGGACAAAACTCTTCCCATTATCGTGATTGCTACTCGTGATGGCTGCTTCAGCAAGCAGCAGTCAGTGATT CAACAGCTTCACGCTCGTAGTGGGCGGTTAATAGTCCTTTGTTCCGAAGGGGATGCTGCTTCAGTTTGCTCTGGGGGATCTTGTAGAGTGATTGAAGTCC CGTTAGTTGAGGATTGCCTTCAACCAGTAGTCAACATTGTTCCATTGCAGCTGTTAGCGTATCATCTCACTGTATTGCGGGGTCACAACGTTGACCAGCC TCGCAATCTAGCGAAGAGTGTGACGACACAGTAA
AA sequence Show only first row Show all	>Lus10020198 pacid=23141969 polypeptide=Lus10020198 locus=Lus10020198.g ID=Lus10020198.BGIv1.0 annot-version=v1.0 MCGIFAYLNYNLHKERSYILQVLFNGLRRLEYRGYDSAGISIDNSSSPCPLVFRQEGKIESLVKSVYQEVSSINLNLEESFSVHAGIAHTRWATHGKPAP KNSHPQTSDSGNEFLVVHNGVITNYEVLKETLVRHGFTFESETDTEVIPKLAKYVFDKANEEGGQVVTFSQVVLEVMCYLEGAYALIFKSRHYPNELIAC KRGSPLWLGVKELTEDNNSEPTFQDAHFVSKDGRAKEFFLSSSTNAIVEHTKKVLMIEDGEVVHLKDGNVSILKFVNDKSRHGHAIARPASVQRALSVLE MEVEQINKGDYEHYMQKEIHEQPESLTTTMRGRLIQGGSCKAKTVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALASRPILEELSGVPVTMEIASDLVD RQGPIYREDTAVFVSQSGETADTLLALEYALENGALCVGITNTVGSAIARKTHCGIHLNAGAEIGVASTKAYTSQIVVMAMLALAIGSDTISNQARREAI VDGLFDLPNKVRDVLKLDNEMKDLANQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGMLAGEMKHGPLALVDKTLPIIVIATRDGCFSKQQSVI QQLHARSGRLIVLCSEGDAASVCSGGSCRVIEVPLVEDCLQPVVNIVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24090			glutamine-fructose-6-phosphate...		Lus10020198 [exp]	0	1
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	1.7	0.9360
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	6.9	0.8803
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	11.0	0.9039
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	15.6	0.9106
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	23.9	0.9027
AT5G55560			Protein kinase superfamily pro...		Lus10001165 [exp]	24.2	0.8939
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	28.0	0.9014
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	31.1	0.9037
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	32.0	0.8994
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10005387 [exp]	32.4	0.8510

Compare expression of checked genes

Lus10020198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.