Plant FIBer expression Database

Lus10020200 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11680 315 / 1e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027000
[exp]
410 / 1e-148 AT5G11680 313 / 5e-110 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G158200
[exp]
316 / 3e-111 AT5G11680 324 / 3e-114 unknown protein
Potri.001G072600
[exp]
311 / 2e-109 AT5G11680 314 / 2e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10020200 pacid=23142031 polypeptide=Lus10020200 locus=Lus10020200.g ID=Lus10020200.BGIv1.0 annot-version=v1.0
ATGGCTCTGAATCCTCAACTTCTCCCCAGTGGACTGCCCGTTCCTTTCGTCAACGAGATGTTTGTGTTGGCTAGAGATGGCGTCGAATTTGAAATCGACA
AGATCCCGGGAAGCAATCATGTCAAAGCTAGAGGAACCATATATTTGTCAAACATAAGAATGGTTTTTGTCGCAAATAAGCCCATGGGAATATTTGGTGC
TTTTGACATGCCCTTGCTTTATGTTCATGGTGAGAAGTTTAACCAGCCGGTATTTCACTGCAACAATATAGCAGGTCGAGTGGAACCGGTTGTCCCAGAA
AACGAGAACAGCAGTCTGTACTCGGCCCACTCATTCAAGATTCTGTTCAAAGAAGGAGGGTGTGGAACCTTTGTCCCACTGTTCTTCAACTTGATAGCTT
CAGTAAGGCAATACAACCGACAGCAGAACTATGCACGAAGCCCTGTTGTGGATCCACTGCAGGCGGCAGAGACTCCAGCAGTGGATGAAATGATCAGACA
TGCGTACGTTGATCCGAACGATCCAACTAAGATCTTCCTGCAGCAGCCAACACCTGGGACAGAATTAAGGCGTCGAACGTATGGGAGTCAAGCAGAAGGA
CATGCCATATGA
AA sequence
>Lus10020200 pacid=23142031 polypeptide=Lus10020200 locus=Lus10020200.g ID=Lus10020200.BGIv1.0 annot-version=v1.0
MALNPQLLPSGLPVPFVNEMFVLARDGVEFEIDKIPGSNHVKARGTIYLSNIRMVFVANKPMGIFGAFDMPLLYVHGEKFNQPVFHCNNIAGRVEPVVPE
NENSSLYSAHSFKILFKEGGCGTFVPLFFNLIASVRQYNRQQNYARSPVVDPLQAAETPAVDEMIRHAYVDPNDPTKIFLQQPTPGTELRRRTYGSQAEG
HAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11680 unknown protein Lus10020200
[exp]
0 1
AT3G49390 CID10 CTC-interacting domain 10 (.1.... Lus10008851
[exp]
1.4 0.9520
AT1G63800 UBC5 ubiquitin-conjugating enzyme 5... Lus10014763
[exp]
2.4 0.9496
AT5G55860 Plant protein of unknown funct... Lus10022531
[exp]
3.5 0.9510
AT3G26935 DHHC-type zinc finger family p... Lus10022451
[exp]
4.5 0.9491
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Lus10038827
[exp]
6.6 0.9399
AT4G10330 glycine-rich protein (.1) Lus10001357
[exp]
8.1 0.9464
AT3G26100 Regulator of chromosome conden... Lus10006242
[exp]
8.9 0.9480
AT5G08560 transducin family protein / WD... Lus10001046
[exp]
8.9 0.9458
AT1G17070 GC-rich sequence DNA-binding f... Lus10006830
[exp]
9.6 0.9144
AT1G15860 Domain of unknown function (DU... Lus10039198
[exp]
13.6 0.9228

Lus10020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.