Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36260 535 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G02740 519 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G05840 515 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G65240 514 / 1e-180 Eukaryotic aspartyl protease family protein (.1) AT5G22850 340 / 6e-112 Eukaryotic aspartyl protease family protein (.1) AT2G36670 311 / 7e-101 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 300 / 2e-96 Eukaryotic aspartyl protease family protein (.1) AT3G42550 152 / 3e-41 Eukaryotic aspartyl protease family protein (.1) AT5G43100 150 / 4e-39 Eukaryotic aspartyl protease family protein (.1) AT4G33490 140 / 1e-36 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027001 [exp] 897 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 726 / 0 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 719 / 0 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 516 / 0 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 320 / 3e-104 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 317 / 9e-103 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10005356 [exp] 317 / 1e-102 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 306 / 8e-99 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 302 / 1e-91 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054900 [exp] 646 / 0 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 535 / 0 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 324 / 1e-105 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 320 / 3e-104 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 297 / 2e-95 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 280 / 7e-89 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 147 / 4e-38 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 142 / 2e-36 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 136 / 9e-35 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 130 / 5e-33 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10020201 pacid=23141958 polypeptide=Lus10020201 locus=Lus10020201.g ID=Lus10020201.BGIv1.0 annot-version=v1.0 ATGGAACAGAGGAGGCTACCGTTGATCTTCCTATTCCCTTTGTTTTTGTTCGTCTCTTTCTCCTTCTCCTCTGCCAACCTCGTTTTTCAGGTTCAGCATA AATATGCCGGCCGTGAGCGGAAGCTCAGCGCTTTCAAAGCGCATGACCTCAACCGTCACCGTCGATTTCTCTCCGCCGTCGAAATCCCTCTCGGTGGCAA TGGCGTTCCTGTCGATGCCGGTCTGTACTATACCAAAATTGGACTTGGGACTCCACCGAAGGACTTCTTTGTGCAGGTTGACACGGGAAGTGATACTTTG TGGGTGAATTGTGCCAACTGCGACAAATGTCCTAAAAAAAGTGATCTCGGTGTAAAACTGTCACTGTTTGATCCCAAGGGTTCCTCCACTGCATCAAGGG TTTCCTGTGATGATGACTTTTGTATTGAGGCATTCAATCACATGATTGATGGTTGTACAAAAGATTTGCCTTGCCGATACAGCATCACCTATGGAGATGG CAGTGAGACAGCAGGATTTTACATTAGGGACAATGTGCAACTTGATCAAGTCACTGGAAATCTTCAAACTGGACCCTTGAATGGCTCCGTTGTATTCGGG TGTGGAGCGACACAATCTGGTCAGTTAGGTACCTCTAGTGAGGCACTTGATGGGATAGTTGGTTTCGGGCAGTCAAACACTTCCATGTTTTCACAACTTG CTTCTTCTGGAAAAGTCAAGCGAGTTTTTTCACATTGCCTGGATAGTGTCAAAGGGGGCGGAATTTTCGCGATTGGCGAAGTGGTCGAACCGAAATTCTC TACTACTCCAATGATACCTCACCAGATGCATTACAATGTGATTCTGAAGGGGCTTGAAGTGGGAAGTGAAATGCTAGATCTTCCAACAGACTTCTTTGAC ACTAAGGATGGAAAAGGAACTATTGTTGATAGTGGTACAACATTGGCATACCTTCCGGAGGTGGCTTTTGAATCAATGATGAGTAAGATCCTTGCTCGAC AGCCTGGACTGAAGTTGCACACTGTTGAAGAGCAGTTCTCTTGCTTTCAATTCGATGGAAAGGTTGACGATGGATTTCCAGTTGTGAAGCTTCATTTTAA AGGTTCACTCAATCTAGCGGTGTATCCCCATGACTATCTCTTTTCAATTCGTGAAGACACTTGGTGCTTTGGGTGGCAGAATAGTGGGGCACAATCTAAA GATACCAAGGATATGTTTCTTTTAGGGGATCTTGTACTCTCAAACAAGCTTGTTGTGTACGATCTGGAAAATGAAGTTATCGGATGGACAAACTACAACT GCTCCTCAAGCATCAAAATAAAGGATGAGAAGTCAGGATCTGTATATCAAATGGCAGCCAAGGATATATCGGCAGCTCACCAGTTGAATCCAGTAAGGAC CGTGACATTTTTGCTGTTCCTATTTGTTGTGTTGTATAGGTTTGCATGA
AA sequence Show only first row Show all	>Lus10020201 pacid=23141958 polypeptide=Lus10020201 locus=Lus10020201.g ID=Lus10020201.BGIv1.0 annot-version=v1.0 MEQRRLPLIFLFPLFLFVSFSFSSANLVFQVQHKYAGRERKLSAFKAHDLNRHRRFLSAVEIPLGGNGVPVDAGLYYTKIGLGTPPKDFFVQVDTGSDTL WVNCANCDKCPKKSDLGVKLSLFDPKGSSTASRVSCDDDFCIEAFNHMIDGCTKDLPCRYSITYGDGSETAGFYIRDNVQLDQVTGNLQTGPLNGSVVFG CGATQSGQLGTSSEALDGIVGFGQSNTSMFSQLASSGKVKRVFSHCLDSVKGGGIFAIGEVVEPKFSTTPMIPHQMHYNVILKGLEVGSEMLDLPTDFFD TKDGKGTIVDSGTTLAYLPEVAFESMMSKILARQPGLKLHTVEEQFSCFQFDGKVDDGFPVVKLHFKGSLNLAVYPHDYLFSIREDTWCFGWQNSGAQSK DTKDMFLLGDLVLSNKLVVYDLENEVIGWTNYNCSSSIKIKDEKSGSVYQMAAKDISAAHQLNPVRTVTFLLFLFVVLYRFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36260			Eukaryotic aspartyl protease f...		Lus10020201 [exp]	0	1
AT1G12650			unknown protein		Lus10017837 [exp]	12.2	0.7626
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	16.1	0.7423
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	16.1	0.7285
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	16.6	0.7107
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	17.3	0.6892
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	18.8	0.6981
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	19.1	0.7050
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	19.4	0.7351
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	27.7	0.7011
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	28.4	0.6869

Compare expression of checked genes

Lus10020201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.