Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65230 312 / 6e-108 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027002 [exp] 463 / 2e-167 AT1G65230 328 / 5e-113 Uncharacterized conserved protein (DUF2358) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G085300 [exp] 347 / 2e-121 AT1G65230 368 / 1e-128 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10020202 pacid=23141997 polypeptide=Lus10020202 locus=Lus10020202.g ID=Lus10020202.BGIv1.0 annot-version=v1.0 ATGGACTTCGGAGAGCTCTGTAACGAGTTCGAATGCATAAGCAGTCCACTGGTGGAATCCACTGCTAGACAACTTGTGAGGGACATCCTTCAGCTTCGCC AGGGTAACCGCGCTCTTGGCACCTTCTCCGTCTCCGTCACTTACAAGGATCCTGTCAGAAGTTTCATCGGTCGTGACAAGTACAAACGGCCTCTTTGGTT CACAGATGCCCTCCGTCACCCTTCCGCGAGCGTGCAAGAAATGGTGATGCTGTCGAGGAGCTTGTTGAGGATCAGATGGACTGTCAGGGGGAAACCAAAA TCCTTCATTCCCGGCTTACTTGCTGGAGAGCTTATAATCAGAGTGAAGTCGGACTTCAATCTCAACCAGATCAGTGGTCAAGTCATTGAGCACCAAGAAT CCTGGGATCTCTCCGATTCATCCCTACTCGGTCAGGCCTTCTTCTGGTCTTCTCGTTGCACTTTCGCAGCATTCGAAGCCGGAAAAGATTTGGGTGTTCT GTTCAAGGACTTGAGCAGCCGCTTCTCCAGCCAGAAGGATGACAACTCGGAGATTTATCCCGACCCCTCTGGGGATCCAACCAAATTCTTTCAAACGGAC GACAGCTTCCAAAGAGACGCTTACCAGATTGCTCTGTTTCTAGCAGTCGTCTATCTGGTTTACCAGTTCCTCAGGATGACCTTGTAA
AA sequence Show only first row Show all	>Lus10020202 pacid=23141997 polypeptide=Lus10020202 locus=Lus10020202.g ID=Lus10020202.BGIv1.0 annot-version=v1.0 MDFGELCNEFECISSPLVESTARQLVRDILQLRQGNRALGTFSVSVTYKDPVRSFIGRDKYKRPLWFTDALRHPSASVQEMVMLSRSLLRIRWTVRGKPK SFIPGLLAGELIIRVKSDFNLNQISGQVIEHQESWDLSDSSLLGQAFFWSSRCTFAAFEAGKDLGVLFKDLSSRFSSQKDDNSEIYPDPSGDPTKFFQTD DSFQRDAYQIALFLAVVYLVYQFLRMTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	1.0	0.9594
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	1.4	0.9430
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	2.8	0.9362
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	3.5	0.9414
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	4.2	0.9198
AT3G53470			unknown protein		Lus10019901 [exp]	4.9	0.9269
AT1G44920			unknown protein		Lus10007720 [exp]	7.7	0.9241
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	8.7	0.9402
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	9.2	0.9370
AT1G78995			unknown protein		Lus10033323 [exp]	10.2	0.9388

Compare expression of checked genes

Lus10020202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.