Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 174 / 2e-50 MATE efflux family protein (.1) AT2G38330 121 / 4e-31 MATE efflux family protein (.1) AT3G08040 100 / 1e-23 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 92 / 1e-20 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026829 [exp] 418 / 1e-144 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 385 / 1e-131 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 347 / 5e-117 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 299 / 2e-94 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10023944 [exp] 270 / 3e-89 AT4G38380 154 / 1e-41 MATE efflux family protein (.1) Lus10012227 [exp] 124 / 6e-32 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10029517 [exp] 106 / 2e-25 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10039609 [exp] 105 / 2e-25 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10027367 [exp] 90 / 7e-20 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 233 / 3e-72 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 218 / 7e-67 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 173 / 7e-50 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 108 / 3e-26 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.016G053600 [exp] 103 / 1e-24 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 98 / 8e-23 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 96 / 4e-22 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 84 / 3e-18 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10020203 pacid=23142081 polypeptide=Lus10020203 locus=Lus10020203.g ID=Lus10020203.BGIv1.0 annot-version=v1.0 ATGAGTACTACTAGGCAGTTTGGTGGAGGTACGCTTTCTAGAGTAGTGACAGGTAGTACAAAATTTACGAAGAGCTCGTCTTTGTGGGCTTGCCATAGTC GATTTGCCAAAGGGTTTGGGTGGAGCCATGGTACTACGCGAAATTACTTTTCTGCCGAGTATAGAGATCGATTGTCACGAGTGTTGACTCGTCGTAAGAG GCGCGATTCGGTGGTGGTTTATAATCAGTCAGCTTCCGGCTATGGGGTTGATTCTGCTGATGTAGATGAGGGTTTGGAGTTGGAAGAAGGAGGTATTGCC ACCAATGGTTCTGCTCATGAGAAATCTGAGGCTATAGGGGTTCCGGTTGAGAAGAAACCTCATCCAGCGAATGTTAAACGCGATCTGGCTATGCTGACAT TGCCTCTGGGTTCAGCTGGTATTGCCAGTATAATCTTCAACGATGTTTCCAAGCTACTCAACATTCCTCTTCTAAGTGTTTGTACTTCTTTTGTTGCCGA GGACATTGCGAAACATGCAGCCGAAAAAGGCCATACTAATGTCGGACTAACCAATAAGGTGGTGAAGAGGAAGCAACTGGCTTCCGTGTCTACAGCATTA CTGCTAGCCATTGGAATAGGAATCGTTGAGGCGACAGTTTTGTCCTTGGGACGTGGTCCATTTCTTGGCTTGATGGGTGTAACACCGGGAACATCAATGC GAATCCCAGCAGAGAGATTTCTGTCAGTGAAGGCACTGGGTGCTCCTGCCGTTGTAATGTCTTTGGCTCTTCAAGGCATATTCAGCGGCTTCAAGGATAC CAAGACTCCTCTTCTTTGCATAGGCTATTTTTTGAACCGCCGCCGTCGTCGCCGTCGTCAGTAA
AA sequence Show only first row Show all	>Lus10020203 pacid=23142081 polypeptide=Lus10020203 locus=Lus10020203.g ID=Lus10020203.BGIv1.0 annot-version=v1.0 MSTTRQFGGGTLSRVVTGSTKFTKSSSLWACHSRFAKGFGWSHGTTRNYFSAEYRDRLSRVLTRRKRRDSVVVYNQSASGYGVDSADVDEGLELEEGGIA TNGSAHEKSEAIGVPVEKKPHPANVKRDLAMLTLPLGSAGIASIIFNDVSKLLNIPLLSVCTSFVAEDIAKHAAEKGHTNVGLTNKVVKRKQLASVSTAL LLAIGIGIVEATVLSLGRGPFLGLMGVTPGTSMRIPAERFLSVKALGAPAVVMSLALQGIFSGFKDTKTPLLCIGYFLNRRRRRRRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	0	1
					Lus10035529 [exp]	3.6	0.8497
AT1G32583			unknown protein		Lus10001911 [exp]	4.5	0.8790
AT4G15620			Uncharacterised protein family...		Lus10041528 [exp]	4.7	0.9154
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	4.9	0.8501
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	5.7	0.8990
AT2G40435			unknown protein		Lus10017415 [exp]	7.3	0.8721
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	7.5	0.8899
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	7.5	0.8641
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	7.6	0.9049
AT5G65120			unknown protein		Lus10000581 [exp]	10.5	0.8514

Compare expression of checked genes

Lus10020203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.