Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 114 / 6e-30 MATE efflux family protein (.1) AT2G38330 87 / 2e-20 MATE efflux family protein (.1) AT1G51340 66 / 5e-13 MATE efflux family protein (.1.2) AT3G08040 63 / 4e-12 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026829 [exp] 162 / 2e-47 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 161 / 3e-47 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 159 / 1e-46 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 134 / 1e-36 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10023944 [exp] 118 / 3e-32 AT4G38380 154 / 1e-41 MATE efflux family protein (.1) Lus10002856 [exp] 82 / 2e-18 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10012227 [exp] 81 / 4e-18 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10016412 [exp] 73 / 2e-15 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 69 / 3e-14 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 115 / 3e-30 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 114 / 3e-30 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 110 / 1e-28 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 81 / 2e-18 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G061100 [exp] 71 / 1e-14 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 69 / 4e-14 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 67 / 2e-13 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G053700 [exp] 65 / 1e-12 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020205 pacid=23142079 polypeptide=Lus10020205 locus=Lus10020205.g ID=Lus10020205.BGIv1.0 annot-version=v1.0 ATGGTCAATTTCCATAGATTAACCCCTTTCTCCATAGCCAAGTTGTTCTCCACATATGCTGAATTACTGCAGGTCGTGAACACCGGTGTATTATTTGTTT GCGCTAGTCAACCTTTGGACGCTCTAGCTTACATCTTCGATGGCCTCCACTTTGGCGTCTCCGACTTCCCATATGCAGCCTGCTCTGTGGTAGTTACCGA ATTCTCCATGCAAACATTTCTACTCAGAAATCTCATGTCTTGCTTTGATGACATCCAGATGACGGTTGGAGCCATATGTTCAGTGTTTCTACTCTATGTC CCTCGAAATCTCGGGCTTCATGGTGTTTGGTCAGGCCTGGCTCTCTTCATGGCCCTACGAACTTTTGCCGGAATCACTGATGCAGAAATCTGGACCTTGG TGGTTCTTACACAAGGACTTGCAGAGTTACCGGGTTGGTTAGTCTACAAAACAGGTGTTAAAGCTTCGCAAACTCTCTTCTAA
AA sequence Show only first row Show all	>Lus10020205 pacid=23142079 polypeptide=Lus10020205 locus=Lus10020205.g ID=Lus10020205.BGIv1.0 annot-version=v1.0 MVNFHRLTPFSIAKLFSTYAELLQVVNTGVLFVCASQPLDALAYIFDGLHFGVSDFPYAACSVVVTEFSMQTFLLRNLMSCFDDIQMTVGAICSVFLLYV PRNLGLHGVWSGLALFMALRTFAGITDAEIWTLVVLTQGLAELPGWLVYKTGVKASQTLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10020205 [exp]	0	1

Compare expression of checked genes

Lus10020205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.