Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 583 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 552 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT2G22920 317 / 2e-103 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT1G73300 313 / 6e-102 SCPL2 serine carboxypeptidase-like 2 (.1) AT2G22970 308 / 3e-100 SCPL11 serine carboxypeptidase-like 11 (.1.2.3) AT2G22990 307 / 9e-100 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT3G12220 301 / 3e-97 SCPL16 serine carboxypeptidase-like 16 (.1) AT5G36180 299 / 1e-96 SCPL1 serine carboxypeptidase-like 1 (.1) AT2G23010 293 / 2e-94 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT2G22980 290 / 3e-93 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038240 [exp] 613 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 612 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 548 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 546 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 544 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 535 / 0 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 498 / 2e-174 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026828 [exp] 418 / 1e-145 AT4G12910 253 / 2e-81 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 323 / 1e-105 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 608 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 590 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291300 [exp] 320 / 2e-104 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 316 / 5e-103 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G290900 [exp] 309 / 6e-100 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 309 / 7e-100 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290800 [exp] 286 / 8e-92 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 284 / 2e-90 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 278 / 7e-88 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.007G072300 [exp] 249 / 4e-77 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10020206 pacid=23142058 polypeptide=Lus10020206 locus=Lus10020206.g ID=Lus10020206.BGIv1.0 annot-version=v1.0 ATGATGAATCTGGCTAGCTTCTTCACGCTGGTAATTTCAATGCACCAGCTGCTGCTATTTGTTGAAGCGGCTCCAAGACAAGCTCTCGTCACCTACCTTC CTGGCTTCAATGGCACTTTCCCCTCCAAACACTATTCTGGGTATGTAAGGTTGGGAGGCAGGACATCACCAGAACACATGTTTTACTACTTTGTTACATC GGAGAGGAATCCCTCCACTGACCCTGTTGTGCTGTGGCTCAACGGCGGCCCCGGCTGCTCTAGTTTTGACGGTTTCGTCTATGAACACGGACCTTTCAAG TTCGAAGCCAATGGTGGGTTGCTAACGTTGCATCTCAACCCCTATGCATGGTCCAAGGTATCAAGCGTGATATATCTGGATTCACCCGTTGGAGTTGGCT TCTCTTTCAAAGATAACACCACCACTTATTCCTCTACTGACACTCTAACTGCCTCCAGAACCCACAACTTCCTCCTCAAGTGGTTGAAGGTGTTTCCAGA GTTCAGTTCCAATCCATTCTATTTGGCTGGAGAGTCTTATGCTGGCATTTATATCCCAACTCTTGCTGCTCATATTGCTCATGGAATCAATGCCAGGGTA CAGCCTGTCATCAATCTCAAGGGATATATGATTGGGAATGGGGTGACGGACGGGGAATTCGACGGGAACGCTTTAGTTCCATTTGCGCATGGGATGGGCC TCATTTCTGATGAACTCTACCAGGGTGCTAATTCCGAATGCAGAGGCAACTACGCCAATCCTAATTCCCCTGTTACTTGCCAGCAGAGACTTGACCAAAT TGATGCCGCTCTAACTGGCCTAAACATATATGACGTTCTGGAGCCCTGCTACCACAGCGCAACAGACACAACAAGCAGGAGCAGTAAAATTCCAAAGAGT TTCAGAGGGTTGGGAAGAAGAAGAGATGAAGAGGAGAGGTTGGTGCCGGTGAGGAAGAGGATGTTTGGTCGGGCTTGGCCGTTTCGTGCGCCTGTTCTCG ATGGCATTGTTCCTCTCTGGTCTCAACTCTCCACCACCACTAACTCCATTCCTTGCACGAATGATGAAGTCGCCACCGCGTGGCTGAACAATGCAGCTGT CAGGAAAGCTCTGCATGTTCCCCTGGATGTGGAGGAGTATCCATGGGATGTTTGTGTTGGGAGATGGAATCTTCTCTACACACATGATACTGGGAGTATG ATCCCTTACCACAAGAATCTCACTTCACTTGGCTATCGAGCTCTGATCTACAGTGGGGATCATGATATGTGCGTGCCCTTTACTGGGACTCAAGCTTGGA CTCGATCTCTTGGATACAAGATTCTCGATCCCTGGAGACCTTGGTTTTCTTCATCTCCTGATTCACAAGTTGCTGGGTACTTGCAGGGATATGATAACAA TCTTATCTTTCTAACCGTAAAGGGATCTGGGCATACTGTTCCAGAGTACAAGCCGCGAGAAGCACTGGATTTCTACTCTCGTTGGCTTGATGGCAAAGCT ATCTGA
AA sequence Show only first row Show all	>Lus10020206 pacid=23142058 polypeptide=Lus10020206 locus=Lus10020206.g ID=Lus10020206.BGIv1.0 annot-version=v1.0 MMNLASFFTLVISMHQLLLFVEAAPRQALVTYLPGFNGTFPSKHYSGYVRLGGRTSPEHMFYYFVTSERNPSTDPVVLWLNGGPGCSSFDGFVYEHGPFK FEANGGLLTLHLNPYAWSKVSSVIYLDSPVGVGFSFKDNTTTYSSTDTLTASRTHNFLLKWLKVFPEFSSNPFYLAGESYAGIYIPTLAAHIAHGINARV QPVINLKGYMIGNGVTDGEFDGNALVPFAHGMGLISDELYQGANSECRGNYANPNSPVTCQQRLDQIDAALTGLNIYDVLEPCYHSATDTTSRSSKIPKS FRGLGRRRDEEERLVPVRKRMFGRAWPFRAPVLDGIVPLWSQLSTTTNSIPCTNDEVATAWLNNAAVRKALHVPLDVEEYPWDVCVGRWNLLYTHDTGSM IPYHKNLTSLGYRALIYSGDHDMCVPFTGTQAWTRSLGYKILDPWRPWFSSSPDSQVAGYLQGYDNNLIFLTVKGSGHTVPEYKPREALDFYSRWLDGKA I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020206 [exp]	0	1
					Lus10021217 [exp]	4.7	0.9819
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	6.5	0.9816
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	9.5	0.9799
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	9.7	0.9783
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	10.4	0.9789
					Lus10041871 [exp]	14.4	0.9747
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10023094 [exp]	14.6	0.8921
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	14.7	0.9762
					Lus10026293 [exp]	16.3	0.9759
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	18.5	0.9720

Compare expression of checked genes

Lus10020206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.